Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g00900 | ATGTCTTGTTTCAGAGGCAAATACGCTGATGAGCTTATTGCCAATGCTGCCTACATTGGAACTCCTGGAAAGGGTATTCTAGCTGCTGATGAATCCACTGGCACAATTGGAAAGCGTTTTGCCAGTATCAATGTTGAGAATGTTGAAACCAACAGACGTGCTCTTCGTGAGCTTCTTTTCACTGCTCCTAATGCTCTCCAATACCTTAGTGGAGTCATTCTCTTCGAGGAAACTCTCTACCAGAAGACAGCTGCAGGCAAGCCTTTCGTTGATGTTTTGAAGGAAGGTGGTGTACTTCCCGGCATTAAGGTTGACGTAGGCACTGTTGAGCTTGCTGGAACCAATGGGGAAACCACAACCCAGGGTCTTGATGGTCTTGCTGGCCGCTGCCAAAAGTACTATGCAGCTGGTGCTCGCTTTGCTAAATGGCGTGCTGTGCTCAAGATCGGTGATAACGAACCATCACAGTTGGCTATCAATGAAAATGCCAACGGATTGGCTAGATATGCCATCATTTGCCAAGAGAATGGTCTTGTGCCCATTGTTGAGCCTGAGATCTTGGTTGATGGTTCTCATGACATCAACAAGTGCGCTGATGTAACAGAACGTGTTCTTGCTGCATGCTACAAGGCTCTAAATGACCACCATGTCCTCTTGGAAGGAACCTTGTTGAAGCCTAACATGGTTACTCCAGGATCTAAAGCTGCAAAGGCTGCACCAGAAGTGATCGCTGAGTACACCGTCCGTGCCCTTCAGCGTACAGTTCCTCCTGCAGTTCCTGCTGTAGTGTTCTTGTCTGGTGGACAGAGCGAAGAGGAGGCCACCGTCAATCTCAATGCCATGAACAAACTGAAGGGAAAGAAGCCATGGTCACTTTCTTTCTCCTTCGGACGTGCTCTGCAACAGAGTACCCTCAAGGCATGGGCTGGAAAGGATGAAAACATCCCCAAGGCTCAGGATGCTTTGCTCGTGAGGTGCAAGGCCAACTCTGAAGCAACTCTTGGAACTTACAAGGGTGATGCTAAGATAAGCGAGGGTGCCTCGGAGAGCCTCCACATCGATAACTACAAGTATTGA | 1077 | 48.56 | MSCFRGKYADELIANAAYIGTPGKGILAADESTGTIGKRFASINVENVETNRRALRELLFTAPNALQYLSGVILFEETLYQKTAAGKPFVDVLKEGGVLPGIKVDVGTVELAGTNGETTTQGLDGLAGRCQKYYAAGARFAKWRAVLKIGDNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGSHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSKAAKAAPEVIAEYTVRALQRTVPPAVPAVVFLSGGQSEEEATVNLNAMNKLKGKKPWSLSFSFGRALQQSTLKAWAGKDENIPKAQDALLVRCKANSEATLGTYKGDAKISEGASESLHIDNYKY | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4286039 | 4288405 | - | CmoCh07G009000.1 | Cmo07g00900 | 386208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g00900 | 358 | Gene3D | Aldolase class I | 1 | 358 | IPR013785 | - | |
| Cmo07g00900 | 358 | PANTHER | FRUCTOSE-BISPHOSPHATE ALDOLASE | 1 | 358 | - | - | |
| Cmo07g00900 | 358 | ProSitePatterns | Fructose-bisphosphate aldolase class-I active site. | 217 | 227 | IPR029768 | - | |
| Cmo07g00900 | 358 | PANTHER | FRUCTOSE-BISPHOSPHATE ALDOLASE | 1 | 358 | IPR000741 | GO:0004332|GO:0006096 | |
| Cmo07g00900 | 358 | SUPERFAMILY | Aldolase | 3 | 358 | - | - | |
| Cmo07g00900 | 358 | CDD | FBP_aldolase_I_a | 9 | 337 | - | - | |
| Cmo07g00900 | 358 | Pfam | Fructose-bisphosphate aldolase class-I | 11 | 358 | IPR000741 | GO:0004332|GO:0006096 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo07g00900 | Cmo14g00273 | CCT | |
| Cmo06g00451 | Cmo07g00900 | CCT | |
| Cmo03g01170 | Cmo07g00900 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g00900 | Cmo-Chr7:4286039 | Cmo09g01037 | Cmo-Chr9:5566088 | 0 | dispersed | |
| Cmo14g00273 | Cmo-Chr14:1235141 | Cmo07g00900 | Cmo-Chr7:4286039 | 0 | wgd | |
| Cmo03g01170 | Cmo-Chr3:9188594 | Cmo07g00900 | Cmo-Chr7:4286039 | 0 | wgd | |
| Cmo06g00451 | Cmo-Chr6:2154072 | Cmo07g00900 | Cmo-Chr7:4286039 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g00900 | K01623 | - | csv:101209044 | 669.463 |