Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00915 ATGGAGGCCCGTCTTCTCAACGCGCCGATTTTTGAACCACTTACTCGTAAATGTCTTCTTCCGCCCCCATTTTCTTTCTCGAGAGGGGCGTCCATTCCGATTGACAATCGAAGCGGAATGAGACATACCAGGCGGGTACTCTGCCAAGCCATGGTTTCAAAAGACACGGTTGATATCTCTAACAGTCCTGTATTGGACACTTCGATTGCGACTCTTGGAGACGCATTGGCGGCGCCCCCTTCGCCTCCTCCCAAAAGGGTATCGGCGGATTCGCTGCAGTTCCCGCCTGGATATCTTGGCGCCGTTCCCGACCGTTCGGGTTCTGATGGTGGCGAGGATGGCCTTGATGCGATGGAGTATTTGACCAGGATTTTGGGTTCGAAGGTGTATGAATTGGCTATTGAATCCCCTTTGCAGCTTGCGCCCAAGTTGTCTGAGCGTTTAGGGGTCAATATCTGGCTCAAGAGGGAGGACTTGCAGCCTGTGTTTTCATTCAAGCTTCGAGGAGCTTATAATATGATGGCTAAACTTCCTAAAGAACAGTTGGAAAAGGGAGTTATATGCTCCTCAGCTGGAAATCATGCTCAAGGAGTTGCATTGGCTGCTAAGCGTTTGAAATGTGATGCTGTGATTGCTATGCCTGTTACGACACCCGAAATTAAGTGGCAATCAGTTCAAAAACTGGGTGCAACTGTTGTTCTTGTTGGAGATTCGTATGACGAGGCACAAGCGTATGCTAAGAAGCGGAGTAAAGAGGAAGGGCGTACGTTCATACCCCCTTTTGATCACCCTGATGTCATAGCTGGGCAGGGTACTGTTGGGATGGAGATTGTTCGTCAAATGAAGGGTCCATTGCATGCTATTTTTGTGCCTGTTGGAGGTGGTGGTCTGATTGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCGGAGGTAAAGATTATTGGGGTGGAGCCATCTGATGCAAATGCGATGGCACTATCATTATGTCATGGCCAAAGAATAATGTTGGACAAGGCTGGAGTTTTTGCAGATGGTGTGGCTGTCAAAGAAGTCGGTGAAGAAACATTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGTCGTGATGCTATATGTGCATCGATAAAGGATATGTTTGAAGAGAAGAGGAGCATCTTGGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCTGAGGCATACTGCAAATATTATGGTTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACCGAACTTGCCAATGTCGGTGCTGAACGAGAGGCTGTTCTCGCAACTATAGTGCCGGAGAAACCTGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGTCCTATGAACATTACAGAATTCAAGTACAGATATAACTCTGAAAAAGAGGCAGTTGTTCTTTATAATGTTGGTATGCATATGCCTTCAGAACTTGAAGAAATGAAGAACAGGATGAAGGCTTCTCAGCTTGAAACTTATAATCTCACAAAAAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCGAACGTCGAAAATGAAGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTCGAGAAGTTCTTAGACGCTTTCAGTCCTCGCTGGAACATTAGTTTGTTTCATTATCGTGGGCAGGGTGAAACTGGTGCAAATATATTGGTTGGACTTCAGATCGACAAATCAGACATGATCGAATTCCACGAACGTGCTAGGAGGCTTGCATACGACTATGTCGTGGTAACTGATGATGGTGTGTTTCAGCTTCTAATGCACACATAG 1857 45.5 MEARLLNAPIFEPLTRKCLLPPPFSFSRGASIPIDNRSGMRHTRRVLCQAMVSKDTVDISNSPVLDTSIATLGDALAAPPSPPPKRVSADSLQFPPGYLGAVPDRSGSDGGEDGLDAMEYLTRILGSKVYELAIESPLQLAPKLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAKRLKCDAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSKEEGRTFIPPFDHPDVIAGQGTVGMEIVRQMKGPLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRIMLDKAGVFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGAEREAVLATIVPEKPGSFKKFCELVGPMNITEFKYRYNSEKEAVVLYNVGMHMPSELEEMKNRMKASQLETYNLTKNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYRGQGETGANILVGLQIDKSDMIEFHERARRLAYDYVVVTDDGVFQLLMHT 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4381972 4387102 - CmoCh07G009150.1 Cmo07g00915 386223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00915 618 Pfam C-terminal regulatory domain of Threonine dehydratase 528 614 IPR001721 -
Cmo07g00915 618 Pfam C-terminal regulatory domain of Threonine dehydratase 434 523 IPR001721 -
Cmo07g00915 618 CDD ACT_ThrD-I_1 443 526 - -
Cmo07g00915 618 CDD Thr-dehyd 121 425 - -
Cmo07g00915 618 ProSiteProfiles ACT-like domain profile. 444 515 IPR001721 -
Cmo07g00915 618 Pfam Pyridoxal-phosphate dependent enzyme 134 421 IPR001926 -
Cmo07g00915 618 SUPERFAMILY ACT-like 524 616 IPR045865 -
Cmo07g00915 618 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 119 615 IPR005787 GO:0004794|GO:0009097
Cmo07g00915 618 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 157 170 IPR000634 GO:0006520|GO:0030170
Cmo07g00915 618 Gene3D - 137 415 IPR036052 -
Cmo07g00915 618 CDD ACT_ThrD-I_2 536 616 - -
Cmo07g00915 618 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 43 616 - -
Cmo07g00915 618 Gene3D - 169 260 IPR036052 -
Cmo07g00915 618 ProSiteProfiles ACT-like domain profile. 537 608 IPR001721 -
Cmo07g00915 618 PANTHER THREONINE DEHYDRATASE 43 616 - -
Cmo07g00915 618 Gene3D Biosynthetic Threonine Deaminase; Domain 3 443 617 IPR038110 -
Cmo07g00915 618 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 119 471 IPR036052 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01186 Cmo07g00915 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01186 Cmo-Chr3:9263027 Cmo07g00915 Cmo-Chr7:4381972 0 dispersed
Cmo03g01187 Cmo-Chr3:9271183 Cmo07g00915 Cmo-Chr7:4381972 0 dispersed
Cmo07g00915 Cmo-Chr7:4381972 Cmo02g01499 Cmo-Chr2:8761414 1.85E-32 dispersed
Cmo03g01185 Cmo-Chr3:9257435 Cmo07g00915 Cmo-Chr7:4381972 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00915 K01754 - csv:101205909 1045.42