Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00916 ATGCGCCTCTTCTTTTGCCTCATCTCCTTCTTACTCTCCTTCTTCCTCACCGGCACGGTCCCCGTCTCCGCCGCCGCCGCCTTCTCCGCCCACCATTTCCCTCTCCACAGAGCCTTCCCCCACCCTCCCACTCCCCATTTTCATTCCCTCAGAGCTCGCGACCGTCTCCGCCATTCCCGCGTCTTGCGCCGATTGCGTGGTGGCATCGTCGACTTCTCCGTTAAAGGCTCCTCCGAGCAATTCGTCGGGCTTTATTACACCAAAGTGAAGTTGGGCAATCCCCAGAGGGAATTCAACGTGCAGATCGATACTGGGAGTGACATTTTGTGGGTCAATTGCAGTCCTTGCGATGGTTGTCCCCAATCAAGCGGACTTGGAATAGAACTCAACTTGTTTGATACTGCAATGTCGTCGTCTGCTAGGCTGGTTTCCTGCTCTGATCCAATATGTTCTGCAGCTCCGACCACCACAAATCAATGCTTATCCCAGAATGACAACTGCAATTACACCTTCCAGTATCGAGATAGAAGTGCGACGTCGGGCTTTTATGTTACTGATTCAATGTATTTTGATATGATTCTTGGGGAGTCTGTGATTGCAAACTCCTCAGCCGCTATTGTTTTTGGGTGTAGCATATATCAGTATGGGGATTTGACTCGAACAACCGTAGCACTTGATGGAATTTTTGGATTTGGTCGAGGGGAGTTTTCAGTTATATCACAATTATCGTCTCGAGGGATAACACCTAAAGTTTTCTCTCACTGTTTGAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATCTACAGAGTATTGCAATCAGCGGGCAACCATTTCCAAATCCCACAGTGTTTTCAATATCAAATGCAGGAGGAACCATTATTGACTCTGGAACAACTTTAGCATATCTTGTGGAAGATGTTTACAACTGGATTGTCTCTGTAATAACTTCTGCTGTTTCTCAATCAACCACCCCTACAATTTCCAGGGGTAGCCAATGTTATCGAGTCTCGACAAGTGTATCAGAAGTATTTCCTGTGATCAGCTTTAATTTTGAGGGTATTGCATCCATGGTGCTGAAACCTGAAGAATATCTTCAGTTTGACAGCATAGAACCTGCTTTACGGTGCATCGGTTTTCAGAAAGCCGAGGATGGAATAAATATTTTAGGAGATCTTGTTTTGAAAGATAAGATCGTCGTCTATGACTTAGCTCGACAACGAATCGGATGGGCCAATTATGACTGTTCATCGTCTGTAAACGTTTCTGTAACGTCCGGGAAGGACGTGTTCATCGATGGACAGCTGAGTGTCAGCAGCTCCTCAAGAAAGCATTTCTATCAGCTGCTCCACATCGTCGTTGTACTACTAATACATTTGAAACTGTTCTGA 1461 46.0 MRLFFCLISFLLSFFLTGTVPVSAAAAFSAHHFPLHRAFPHPPTPHFHSLRARDRLRHSRVLRRLRGGIVDFSVKGSSEQFVGLYYTKVKLGNPQREFNVQIDTGSDILWVNCSPCDGCPQSSGLGIELNLFDTAMSSSARLVSCSDPICSAAPTTTNQCLSQNDNCNYTFQYRDRSATSGFYVTDSMYFDMILGESVIANSSAAIVFGCSIYQYGDLTRTTVALDGIFGFGRGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIAISGQPFPNPTVFSISNAGGTIIDSGTTLAYLVEDVYNWIVSVITSAVSQSTTPTISRGSQCYRVSTSVSEVFPVISFNFEGIASMVLKPEEYLQFDSIEPALRCIGFQKAEDGINILGDLVLKDKIVVYDLARQRIGWANYDCSSSVNVSVTSGKDVFIDGQLSVSSSSRKHFYQLLHIVVVLLIHLKLF 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4389137 4394414 - CmoCh07G009160.1 Cmo07g00916 386224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00916 486 Gene3D Acid Proteases 270 447 IPR021109 -
Cmo07g00916 486 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Cmo07g00916 486 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Cmo07g00916 486 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Cmo07g00916 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 18 456 - -
Cmo07g00916 486 Gene3D Acid Proteases 70 269 IPR021109 -
Cmo07g00916 486 CDD pepsin_A_like_plant 85 439 IPR034161 -
Cmo07g00916 486 Pfam Xylanase inhibitor C-terminal 287 435 IPR032799 -
Cmo07g00916 486 Pfam Xylanase inhibitor N-terminal 85 269 IPR032861 -
Cmo07g00916 486 SUPERFAMILY Acid proteases 82 443 IPR021109 -
Cmo07g00916 486 ProSiteProfiles Peptidase family A1 domain profile. 85 435 IPR033121 -
Cmo07g00916 486 PANTHER ASPARTYL PROTEASES 18 456 IPR001461 GO:0004190|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00420 Cmo07g00916 CCT
Cmo06g00420 Cmo07g00916 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00916 Cmo-Chr7:4389137 Cmo10g00885 Cmo-Chr10:4302170 4.20E-95 dispersed
Cmo09g00773 Cmo-Chr9:3928119 Cmo07g00916 Cmo-Chr7:4389137 7.66E-24 dispersed
Cmo14g00244 Cmo-Chr14:1119458 Cmo07g00916 Cmo-Chr7:4389137 0 wgd
Cmo02g01402 Cmo-Chr2:8313305 Cmo07g00916 Cmo-Chr7:4389137 1.35E-175 wgd
Cmo20g00568 Cmo-Chr20:2756324 Cmo07g00916 Cmo-Chr7:4389137 9.99E-151 wgd
Cmo06g00420 Cmo-Chr6:2018132 Cmo07g00916 Cmo-Chr7:4389137 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00916 - - csv:101205203 746.117