Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00919 ATGGCAATTCAAATCCTTTTGTTTACACTTTCATTCATCCTCTTCTCCTTCTCAGCCTTAACCGGTGCCGGCAGCCAATTGTCGACCACCGGCTTCAAATTACTCCCTGGGTCGACACTGACGGTGACCACTTCTCCGCCGTGGTCCGGTAGGTTTTGGGCTAGAACTCACTGCTCCACAGATGCAACTGGGAAATTCTCTTGCGGAACCGGCGACTGTGGCAGTGGCCAAGTCACCTGCGACGGCGCCGGCGCAATTCCGCCGGCAAGCCTGGTTGAATTCACCATAGCACCAAACGGCGGCCGAGATTTCTTCGATATCAGCCTCGTCGATGGCTTCAACTTGCCGGTTTCGGTGACGCCAACGGGCGGATCGAGTGAGTGCAAATCGGTAATTTGTGCGGGAAATGTGAATGGGGTTTGTCCGCCGGAGTTGGCCGTTAAAGGGCAGGGTGGCGGCGTGATTGCTTGTAAAAGTGCTTGTTTGGGTTTGAATCGGCCGAAATATTGCTGCAGCGGAGGCCACGATCAGCCGCAGACCTGTCCGCCGACGAATTATTCAAAGATATTCAAGAATGAGTGCCCTGATGCTTATAGCTACGCCTACGATGATAAAACTAGCACGTTCACCTGCACGGGCGGAGCCAATTATGGCATCACTTTCTGTCCTTGA 672 53.57 MAIQILLFTLSFILFSFSALTGAGSQLSTTGFKLLPGSTLTVTTSPPWSGRFWARTHCSTDATGKFSCGTGDCGSGQVTCDGAGAIPPASLVEFTIAPNGGRDFFDISLVDGFNLPVSVTPTGGSSECKSVICAGNVNGVCPPELAVKGQGGGVIACKSACLGLNRPKYCCSGGHDQPQTCPPTNYSKIFKNECPDAYSYAYDDKTSTFTCTGGANYGITFCP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4410234 4411362 - CmoCh07G009190.1 Cmo07g00919 386227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00919 223 ProSiteProfiles Thaumatin family profile. 19 223 IPR001938 -
Cmo07g00919 223 PIRSF PR5 16 223 IPR001938 -
Cmo07g00919 223 Gene3D Thaumatin 15 223 IPR037176 -
Cmo07g00919 223 PANTHER PRU PROTEIN, PUTATIVE-RELATED 20 223 - -
Cmo07g00919 223 PANTHER OS03G0233200 PROTEIN 20 223 IPR001938 -
Cmo07g00919 223 ProSitePatterns Thaumatin family signature. 64 80 IPR017949 -
Cmo07g00919 223 SMART tha2 15 223 IPR001938 -
Cmo07g00919 223 PRINTS Pathogenesis-related protein signature 30 39 IPR001938 -
Cmo07g00919 223 PRINTS Pathogenesis-related protein signature 103 119 IPR001938 -
Cmo07g00919 223 PRINTS Pathogenesis-related protein signature 51 62 IPR001938 -
Cmo07g00919 223 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Cmo07g00919 223 CDD TLP-PA 20 222 - -
Cmo07g00919 223 Pfam Thaumatin family 21 223 IPR001938 -
Cmo07g00919 223 SUPERFAMILY Osmotin, thaumatin-like protein 20 223 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00919 Cmo14g00231 CCT
Cmo03g01193 Cmo07g00919 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00919 Cmo-Chr7:4410234 Cmo19g00293 Cmo-Chr19:2176427 7.65E-84 dispersed
Cmo14g00231 Cmo-Chr14:1063909 Cmo07g00919 Cmo-Chr7:4410234 8.32E-83 wgd
Cmo03g01193 Cmo-Chr3:9325015 Cmo07g00919 Cmo-Chr7:4410234 1.88E-119 wgd
Cmo06g00402 Cmo-Chr6:1954398 Cmo07g00919 Cmo-Chr7:4410234 2.77E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00919 - - csv:101204962 346.665