Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00925 ATGGTGGCTGCAATCTGTACTGTGCTGCTAGCTTTGCTGCTACACTCCCTCTCGCCGCCATGCACCGCTCTCAACCTCAGTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGATTCCATAACAAGAAGGCGACTGATCCAAAACTCAGAGAACGACGAATCTTCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATTCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTTGGCCAGTACGCTTCAGGAGGGAAGAACGGTGAGTTCTACGTCGTCACAGATGACTCCGACGATGATCCAGTCAATCCAGAGCCCGGGACATTACGATACGCCGTTATACAGCCACAGCCTCTCTGGATCGTCTTCCCCGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTTAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCATATCGTCGGCGGCGGTTGCATCACCTTGCAATACATAAGTAACGTCATTATCCACAATATCCACATCCACCATTGTTATCCATCAGGGAACACCATGGTCCGATCAAGTCCGACGCATTACGGATACCGTACGAAATCGGACGGCGACGGGATCTCGATCTTCGGGTCTAAGGACATATGGATTGACCATTGTTCGCTCTCGCATTGCAAGGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGTTACTAGGTCACAGTGACAGCTACTCGCCGGACTCCGGAATGCAGGTAACAATAGCATTCAACCACTTCGGCGAGAAGCTTGTGCAAAGGATGCCACGGTGCCGGCGAGGCTACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGCGGGAACCCCACAATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGTGTAGAGACCGCCGAGTCCGAGTGGCGCGGCTGGAATTGGCGCTCTGACGGCGACATCCTCGTCAACGGCGCCTTCTTCGTCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAGCCCAAGTCCGCCGCCCTAATCGACCAGCTCACCTGGCACGCCGGTCCACTCGGCGTCGGCAGTAGGGACAACAATTTGGGCATGTGGACCACTGGCTCTAATGGTGGCGGTGGCTTTGTTCTTGGGTCTGGCCCGGATTACACTGACGACATGTCGGAAAGCCTCTCGCGGATCCGGTTTCGATATTTTGTTATGGTATTTTCTTTTTGTGCATTGGCACTTGCCTTTGTGCCATGA 1419 54.05 MVAAICTVLLALLLHSLSPPCTALNLSLPGQHPSPELVAQEVHRKVNDSITRRRLIQNSENDESSSCYTGNPIDDCWKCDSNWPNNRQRLADCAIGFGQYASGGKNGEFYVVTDDSDDDPVNPEPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYSPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETAESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGSRDNNLGMWTTGSNGGGGFVLGSGPDYTDDMSESLSRIRFRYFVMVFSFCALALAFVP 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4447501 4449908 - CmoCh07G009250.1 Cmo07g00925 386233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00925 472 PANTHER PECTATE LYASE 18-RELATED 4 430 IPR045032 GO:0030570
Cmo07g00925 472 SMART amb_all 145 342 IPR002022 -
Cmo07g00925 472 Gene3D - 70 412 IPR012334 -
Cmo07g00925 472 PANTHER PECTATE LYASE 12-RELATED 4 430 - -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cmo07g00925 472 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Cmo07g00925 472 Pfam Pectate lyase 155 334 IPR002022 -
Cmo07g00925 472 SUPERFAMILY Pectin lyase-like 65 395 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00925 Cmo-Chr7:4447501 Cmo17g00119 Cmo-Chr17:645851 0 dispersed
Cmo15g00508 Cmo-Chr15:2333478 Cmo07g00925 Cmo-Chr7:4447501 0 wgd
Cmo18g00915 Cmo-Chr18:10329109 Cmo07g00925 Cmo-Chr7:4447501 0 wgd
Cmo03g01201 Cmo-Chr3:9366781 Cmo07g00925 Cmo-Chr7:4447501 0 wgd
Cmo04g02667 Cmo-Chr4:19398147 Cmo07g00925 Cmo-Chr7:4447501 6.28E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00925 K01728 - csv:101203012 843.958