Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00925 | ATGGTGGCTGCAATCTGTACTGTGCTGCTAGCTTTGCTGCTACACTCCCTCTCGCCGCCATGCACCGCTCTCAACCTCAGTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGATTCCATAACAAGAAGGCGACTGATCCAAAACTCAGAGAACGACGAATCTTCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATTCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTTGGCCAGTACGCTTCAGGAGGGAAGAACGGTGAGTTCTACGTCGTCACAGATGACTCCGACGATGATCCAGTCAATCCAGAGCCCGGGACATTACGATACGCCGTTATACAGCCACAGCCTCTCTGGATCGTCTTCCCCGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTTAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCATATCGTCGGCGGCGGTTGCATCACCTTGCAATACATAAGTAACGTCATTATCCACAATATCCACATCCACCATTGTTATCCATCAGGGAACACCATGGTCCGATCAAGTCCGACGCATTACGGATACCGTACGAAATCGGACGGCGACGGGATCTCGATCTTCGGGTCTAAGGACATATGGATTGACCATTGTTCGCTCTCGCATTGCAAGGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGTTACTAGGTCACAGTGACAGCTACTCGCCGGACTCCGGAATGCAGGTAACAATAGCATTCAACCACTTCGGCGAGAAGCTTGTGCAAAGGATGCCACGGTGCCGGCGAGGCTACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGCGGGAACCCCACAATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGTGTAGAGACCGCCGAGTCCGAGTGGCGCGGCTGGAATTGGCGCTCTGACGGCGACATCCTCGTCAACGGCGCCTTCTTCGTCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAGCCCAAGTCCGCCGCCCTAATCGACCAGCTCACCTGGCACGCCGGTCCACTCGGCGTCGGCAGTAGGGACAACAATTTGGGCATGTGGACCACTGGCTCTAATGGTGGCGGTGGCTTTGTTCTTGGGTCTGGCCCGGATTACACTGACGACATGTCGGAAAGCCTCTCGCGGATCCGGTTTCGATATTTTGTTATGGTATTTTCTTTTTGTGCATTGGCACTTGCCTTTGTGCCATGA | 1419 | 54.05 | MVAAICTVLLALLLHSLSPPCTALNLSLPGQHPSPELVAQEVHRKVNDSITRRRLIQNSENDESSSCYTGNPIDDCWKCDSNWPNNRQRLADCAIGFGQYASGGKNGEFYVVTDDSDDDPVNPEPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYSPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETAESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGSRDNNLGMWTTGSNGGGGFVLGSGPDYTDDMSESLSRIRFRYFVMVFSFCALALAFVP | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4447501 | 4449908 | - | CmoCh07G009250.1 | Cmo07g00925 | 386233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00925 | 472 | PANTHER | PECTATE LYASE 18-RELATED | 4 | 430 | IPR045032 | GO:0030570 | |
Cmo07g00925 | 472 | SMART | amb_all | 145 | 342 | IPR002022 | - | |
Cmo07g00925 | 472 | Gene3D | - | 70 | 412 | IPR012334 | - | |
Cmo07g00925 | 472 | PANTHER | PECTATE LYASE 12-RELATED | 4 | 430 | - | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 93 | 110 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 117 | 142 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 153 | 169 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 217 | 238 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 297 | 316 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 361 | 385 | IPR018082 | - | |
Cmo07g00925 | 472 | PRINTS | Pollen allergen Amb family signature | 390 | 413 | IPR018082 | - | |
Cmo07g00925 | 472 | Pfam | Pectate lyase | 155 | 334 | IPR002022 | - | |
Cmo07g00925 | 472 | SUPERFAMILY | Pectin lyase-like | 65 | 395 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00925 | Cmo-Chr7:4447501 | Cmo17g00119 | Cmo-Chr17:645851 | 0 | dispersed | |
Cmo15g00508 | Cmo-Chr15:2333478 | Cmo07g00925 | Cmo-Chr7:4447501 | 0 | wgd | |
Cmo18g00915 | Cmo-Chr18:10329109 | Cmo07g00925 | Cmo-Chr7:4447501 | 0 | wgd | |
Cmo03g01201 | Cmo-Chr3:9366781 | Cmo07g00925 | Cmo-Chr7:4447501 | 0 | wgd | |
Cmo04g02667 | Cmo-Chr4:19398147 | Cmo07g00925 | Cmo-Chr7:4447501 | 6.28E-20 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00925 | K01728 | - | csv:101203012 | 843.958 |