Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00947 ATGGCCGATGCAAAGACCATATGCAACAGCCCCACCACACATCACGACCCACTAAACTGGGGCGTGGCGGCCGAGTCCCTTAAGGGAAGCCATCTTAATGAGGTGAAGCGCATGGTGGAAGAGTACCAGAGCGCCCTTGTCAAGCTCGATGGTGAAACACTCACTGTTTCCCAAGTGGCTGCTATTGCTACTAGGCACTCCCATGTTGCTGTGGAGCTTTCAGAGTCTACTAGAGCTGGCGTTATGGCTAGTAGTGATTGGATTATGGAGAGCCTGAAGAAAGGCACAGATAGTTATGGAGTCTCTACTGGCTTTGGTGCTAACTCTCATAGAAGGACCCAACAAGGTGGAGACCTTCAAAAGGAGCTGATTCGATTCTTGAATGCTGGGATCTTTGGAGAAGAGGCTGAGTCGAGCCATGTTTTGTCTCACTCCGCTACAAGAGCGGCCATGTTAGTGAGAGTCAACACTCTTCTTCAAGGCTACTCGGGTGTTAGATTTGAGATTTTGGAAGCCATAACCAAGCTCTTGAACCATAACGTAACTCCATGCTTGCCTCTTCGTGGAACCGTTACTGCCTCTGGTGATCTTGTTCCTCTTTCTTACCTTGCTGGACTGCTCACTGGTCGGCCGAACTCAAAAGCTATTGGTCCAAATGGAGAGAGTTTTGGTGCAAAGGAAGCTTTTCAAAAAGCTCATATTCCTTCTGGCTTCTTTGAGTTCCAACCTAAAGAAGGTTTTGCTATTGTCAATAGTACTGCTGTTGGCTCTGGACTGGCTTCGATTGTTCTGTTTGATGCCAATATTTTGGCTGTTTTGTCTGAGATTTTGTCGGCCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAATTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATCATGGAACACATATTGGATGGAAGTTCTTACATGAAAACTGCAAAGAAATTACATGAAACGGACCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTGATTCGATTCTCAACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAGGGCTCTGAATGGAGGCAACTTTCAAGGAACACCAATTGGAGTCTCCATGGACAACACTCGATTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAATGATTTCTACAATAATGGGCTACCTTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTAGATTATGGATTTAAAGGTGCTGAAGTTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAACTCACGTACAGAGCGCTGAACAACACAACCAAGATGTTAACTCCCTTGGTTTAATCTCTTCAAGAAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCATCAACATTTTTGGTTGCACTCTGTCAAGCAATCGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACTGTCAAAAACACCGTAAGCCTGGTAGCTAAGAAAGTGTTGCCATCGCCAAAATTATGGGAGAAAGAGTTATTGAAGGTTGTCGACAGAGAGTACACTTTTGGTTATATAGATGATCCATGTAGTGCTACTTACCCATTGATGGAGAAATTGAGACAAGTTCTTGTGGAGCATGCTCTCACAAATGATGATGATGATGATGAGAAGAACGAGAACACTTCAATTTTACGAAAGATTGCTTCTTTCGAAGAGGAATTAAGGGCAATTTTACCAAAAGAAGTTGAGAAGACAAGACTTGCATATGAGAGTGGAAATGCAGAGATTAAGAACCAGATTAAGGAATGCAGGTCTTATCCGTTGTATAGGTTTGTAAGAGAAGAATTGGAGACAAAATTACTGACGGGTGAAAAAATGATATCTCCTGGAGAGATGTGTGAAAAAGTATTCACAGCTTTGTGTAAAGGGAAGATGATTGATTGTATGTTAGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATATGTTAG 2106 43.02 MADAKTICNSPTTHHDPLNWGVAAESLKGSHLNEVKRMVEEYQSALVKLDGETLTVSQVAAIATRHSHVAVELSESTRAGVMASSDWIMESLKKGTDSYGVSTGFGANSHRRTQQGGDLQKELIRFLNAGIFGEEAESSHVLSHSATRAAMLVRVNTLLQGYSGVRFEILEAITKLLNHNVTPCLPLRGTVTASGDLVPLSYLAGLLTGRPNSKAIGPNGESFGAKEAFQKAHIPSGFFEFQPKEGFAIVNSTAVGSGLASIVLFDANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNRALNGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEVAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSLVAKKVLPSPKLWEKELLKVVDREYTFGYIDDPCSATYPLMEKLRQVLVEHALTNDDDDDEKNENTSILRKIASFEEELRAILPKEVEKTRLAYESGNAEIKNQIKECRSYPLYRFVREELETKLLTGEKMISPGEMCEKVFTALCKGKMIDCMLECLKEWNGAPIPIC 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4554243 4556348 + CmoCh07G009470.1 Cmo07g00947 386255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00947 701 Gene3D Fumarase/aspartase (Central domain) 254 696 - -
Cmo07g00947 701 Pfam Aromatic amino acid lyase 54 528 IPR001106 -
Cmo07g00947 701 Gene3D - 7 253 IPR024083 -
Cmo07g00947 701 Gene3D - 520 635 IPR023144 -
Cmo07g00947 701 SUPERFAMILY L-aspartase-like 16 701 IPR008948 GO:0003824
Cmo07g00947 701 Coils Coil 32 52 - -
Cmo07g00947 701 PANTHER HISTIDINE AMMONIA-LYASE 6 701 IPR001106 -
Cmo07g00947 701 CDD PAL-HAL 52 517 IPR001106 -
Cmo07g00947 701 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 6 701 - -
Cmo07g00947 701 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 16 691 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo07g00947 701 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 189 205 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00947 Cmo-Chr7:4554243 Cmo03g01228 Cmo-Chr3:9488952 0 dispersed
Cmo07g00947 Cmo-Chr7:4554243 Cmo07g00948 Cmo-Chr7:4557877 0 tandem
Cmo03g01227 Cmo-Chr3:9485339 Cmo07g00947 Cmo-Chr7:4554243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00947 K10775 - csv:101218856 1179.08