Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00948 ATGGCACCAGCTCCCTTCCAACAACTTGCCGCCCAAAATGGTTCGGTGGAGACCTTCTGCATTACCCGCAACGATCCACTTAACTGGGGTGTGGCTGCCGACGCTCTCAAGGGAAGCCATCTCGATGAGGTCAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTCGGTGGTGAGACTCTCACAATCTCACAAGTGGCTGCCATTGCCACTCGTGATAATGATGTGATGGTCGAGTTGGCTGAGTCCGCTAGAGCGGGCGTTAAAGCTAGCAGTGATTGGATTATGGAGAGCATGAACAAAGGCACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCCGCTACCAGGGCGGCTATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATCAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATACTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATTACTGCTTCGGGTGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGCCGACCAAACTCTAAGGCTGTTGGACCAAATGGAGAAAGCCTTGATGCAATGGAGGCTTTTCAACAAGCTGGCATTCCTTCTGGGTTCTTTGAATTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCGATTGTTCTGTTTGAGGCCAATATTTTGGCTGTTTTGTCGGAGATTTTGTCAGCCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACACACAAGTTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCCTGGATGGAAGTTCTTACATGAAAGCTGCAAAGAAATTGCATGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTCATTCGATTCTCAACAAAATCTATCGAAAGAGAGATTAACTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCGATCCATGGAGGCAACTTCCAAGGAACTCCAATTGGTGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTCTACAACAATGGATTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTTAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACTAGCCATGTACAGAGCGCCGAGCAACACAACCAAGATGTTAACTCGCTGGGTTTAATCTCTTCAAGGAAAACAGCCGAAGCCCTTGATATTTTAAAACTCATGTCTTCCACCTTTTTGGTTGCCCTCTGCCAAGCAATCGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACTGTGAAAAACTGTGTTAGCCAAACAGCCAAGAAAGTGTTGACCACATCCTCTAATGGAGCGCTTCACCCATCAAGGTTTTGTGAGAAAGATCTTCTAAAAGTTGTGGACAGAGAGCACACCTTTGCTTATATCGATGATCCATGCAGTGCCACTTACCCATTGAGCCAAAAGTTGAGGCAAGTCCTTGTTGAGCACGCACTTGGCAATGGTGATTGTGAAAAGGACGCAGACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAGGAGGAACTAAAGGCCGTGTTACCAAAAGAAGTTGAAAATGCAAGGTTGTCGTACGAAAGTGGAAATTCCAAAATTGAGAATCAGATAAAGGACTGCAGATCTTATCCATTGTATAGGTTTGTGAGAGAAGAATTGGGAACGAATCTTCTGACAGGAGAAAAAGTGATATCTCCAGGAGAAGAGTGCGAAAAGGTGTTCACAGCTCTGTGTGAAGGGAAGATGATCGACTCTATCTTGGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCCATCTGCTAA 2151 45.56 MAPAPFQQLAAQNGSVETFCITRNDPLNWGVAADALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWIMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAMEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNCVSQTAKKVLTTSSNGALHPSRFCEKDLLKVVDREHTFAYIDDPCSATYPLSQKLRQVLVEHALGNGDCEKDADTSIFQKIGAFEEELKAVLPKEVENARLSYESGNSKIENQIKDCRSYPLYRFVREELGTNLLTGEKVISPGEECEKVFTALCEGKMIDSILECLKEWNGAPIPIC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4557877 4560027 + CmoCh07G009480.1 Cmo07g00948 386256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00948 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo07g00948 716 Pfam Aromatic amino acid lyase 63 535 IPR001106 -
Cmo07g00948 716 CDD PAL-HAL 61 526 IPR001106 -
Cmo07g00948 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cmo07g00948 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824
Cmo07g00948 716 Gene3D - 529 650 IPR023144 -
Cmo07g00948 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 716 - -
Cmo07g00948 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Cmo07g00948 716 Gene3D - 16 262 IPR024083 -
Cmo07g00948 716 PANTHER HISTIDINE AMMONIA-LYASE 21 716 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00948 Cmo-Chr7:4557877 Cmo07g00951 Cmo-Chr7:4597899 0 dispersed
Cmo07g00952 Cmo-Chr7:4609893 Cmo07g00948 Cmo-Chr7:4557877 2.51E-106 dispersed
Cmo07g00947 Cmo-Chr7:4554243 Cmo07g00948 Cmo-Chr7:4557877 0 tandem
Cmo07g00948 Cmo-Chr7:4557877 Cmo07g00949 Cmo-Chr7:4565416 0 tandem
Cmo10g00774 Cmo-Chr10:3597743 Cmo07g00948 Cmo-Chr7:4557877 0 transposed
Cmo18g00900 Cmo-Chr18:10253900 Cmo07g00948 Cmo-Chr7:4557877 0 wgd
Cmo20g00532 Cmo-Chr20:2588734 Cmo07g00948 Cmo-Chr7:4557877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00948 K10775 - csv:101218617 1310.05