Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00952 ATGGCCCCAGCTCCCTTCCAACAACTTGCCGCCCAAAATGGTTCGGTGGAGACCTTCTGCATTACCCGCAACGATCCACTTAACTGGGGTGTGGCTGCCGACGCTCTCAAGGGAAGCCATCTCGATGAGGTCAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGCGGTGAGACTCTCACCATTTCCCAAGTGGCCGCCATTGCCACTCGTGATAATGATGTGCTGGTCCAGTTGGCTGAGTCTGCTAGAGCTGGCGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGTTACGGTGTTACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCCGCTACCAGGGCGGCTATGTTGATCGAGGCTGCTGCAATTATGGAACACATCCTGGATGGAAGTTCTTACATGAAAGCTGCAAAGAAATTGCATGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTCATTCGATTCTCAACAAAATCTATCGAAAGAGAGATTAACTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCGATCCATGGAGGCAACTTCCAAGGAACTCCAATTGGTGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTCTACAACAATGGATTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTTAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACTAGCCATGTACAGAGCGCCGAGCAACACAACCAAGATGTTAACTCGCTGGGTTTAATCTCTTCAAGGAAAACAGCCGAAGCCCTTGATATTTTAAAACTCATGTCTTCCACCTTTTTGGTTGCCCTCTGCCAAGCAATCGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACTGTGAAAAACTGTGTTAGCCAAACAGCCAAGAAAGTGTTGACCACATCCTCTAATGGAGCGCTTCACCCATCAAGGTTTTGTGAGAAAGATCTTCTAAAAGTTGTGGACAGAGAGCACACCTTTGCTTATATCGATGATCCATGCAGTGCCACTTACCCATTGAGCCAAAAGTTGAGGCAAGTCCTTGTTGAGCACGCACTTGGCAATGGTGATTGTGAAAAGGACGCAGACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAGGAGGAACTAAAGGCCGTGTTACCAAAAGAAGTTGAAAATGCAAGGTTGTCGTACGAAAGTGGAAATTCCAAAATTGAGAATCAGATAAAGGACTGCAGATCTTATCCATTGTATAGGTTTGTGAGAGAAGAATTGGGAACGAATCTTCTGACAGGAGAAAAAGTGATATCTCCAGGAGAAGAGTGCGAAAAGGTGTTCACAGCTCTGTGTGAAGGGAAGATGATCGACTCTATCTTGGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCCATCTGCTAA 1692 46.1 MAPAPFQQLAAQNGSVETFCITRNDPLNWGVAADALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVLVQLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNCVSQTAKKVLTTSSNGALHPSRFCEKDLLKVVDREHTFAYIDDPCSATYPLSQKLRQVLVEHALGNGDCEKDADTSIFQKIGAFEEELKAVLPKEVENARLSYESGNSKIENQIKDCRSYPLYRFVREELGTNLLTGEKVISPGEECEKVFTALCEGKMIDSILECLKEWNGAPIPIC 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4609893 4612726 + CmoCh07G009520.1 Cmo07g00952 386260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00952 563 Gene3D Fumarase/aspartase (Central domain) 145 558 - -
Cmo07g00952 563 PANTHER HISTIDINE AMMONIA-LYASE 162 563 IPR001106 -
Cmo07g00952 563 PANTHER HISTIDINE AMMONIA-LYASE 21 162 IPR001106 -
Cmo07g00952 563 CDD PAL-HAL 61 373 IPR001106 -
Cmo07g00952 563 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 162 563 - -
Cmo07g00952 563 SUPERFAMILY L-aspartase-like 25 162 IPR008948 GO:0003824
Cmo07g00952 563 SUPERFAMILY L-aspartase-like 162 563 IPR008948 GO:0003824
Cmo07g00952 563 Pfam Aromatic amino acid lyase 162 382 IPR001106 -
Cmo07g00952 563 Pfam Aromatic amino acid lyase 63 164 IPR001106 -
Cmo07g00952 563 Gene3D - 376 497 IPR023144 -
Cmo07g00952 563 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 162 - -
Cmo07g00952 563 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 162 553 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00952 Cmo-Chr7:4609893 Cmo07g00948 Cmo-Chr7:4557877 2.51E-106 dispersed
Cmo07g00951 Cmo-Chr7:4597899 Cmo07g00952 Cmo-Chr7:4609893 2.09E-107 tandem
Cmo07g00952 Cmo-Chr7:4609893 Cmo07g00953 Cmo-Chr7:4621158 1.66E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00952 K10775 - csv:101218617 757.673