Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00953 ATGGCCCCAGCTCCCTTCCAACAACTTGCCGCCCAAAATGGTTCGGTGGAGACCTTCTGCATTACCCGCAACGATCCACTCAACTGGGGTGTGGCTGCCGAGTCTCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAATATCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAATGATGTGATGGTCGAGTTGGCTGAGTCTGCTAGAGCTGGCGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACCCTGCCCCACTCCGCTACCAGGGCGGCTATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATCAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATAGTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATTACTGCTTCGGGTGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGCCGACCAAACTCTAAGGCTGTTGGACCAAATGGAGAAAGCCTTGATGCAATGGAGGCTTTTCAACAAGCTGGCATTCCTTCTGGGTTCTTTGAATTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCGATTGTTCTGTTTGAGGCCAATATCTTGGCTGTTTTGTCTGAGATTTTATCAGCCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACACACAAATTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCTTGGATGGAAGTTCTTACATGAAAACTGCAAAGAAATTGCATGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTCATTCGATTCTCAACAAAATCTATCGAAAGAGAGATTAACTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCGATCCATGGAGGCAACTTCCAAGGAACTCCAATTGGTGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTCTACAACAATGGGCTTCCTTCAAATCTCTCTGCAAGCAGAAACCCGAGTTTAGATTATGGATTCAAGGGTGCAGAAATTGCCATGGCTTCTTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCACGTCCAGAGTGCAGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATCTCTTCAAGGAAAACAGCCGAAGCCATTGACATTCTGAAACTCATGTCATCAACATTTTTGGTTGCATTATGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAACAAAGTTAAAAGCACAGTGAAGCAAGTGGCAAAAAAAGTCCTGACCACTTCCTCAAACGGCGCACTCCATCCCTCGAGGTTTTGCGAGAAAGACTTACTCCAAGTGGTTGATAGAGAATACACCTTCGCTTACATTGACGATCCATGCAGCGCTACATACCCATTGATGCAAAAGCTAAGACAAGTTATCGTCGAGCACGCTTTGAGCAATGGAGAAATGGAAAAAGATACTGAAACTTCAATCTTTCAAAAGATTGGTTGTTTTGAAGAGGAATTGAAAGGCATATTGCCCAAGGAAGTGGAAAGCGTGAGATTAGCATATGAAAATGGAGATGCAACGATTGAGAACCAGATTAAAGAATGCAGATCCTACCCATTATATAAGTTTGTGAGAGAAGAATTGGGAACTAAATTGGTGAGCGGAGAAAGGGTTATATCTCCCGGAGAAGAGTGTGAGAAAGTTTTCAGTGCATTGTGTGAAGGGAAGATGATTGACCCAATTTTGGAATGCTTGAAAGAGTGGAATGGTGCTCCAATTCCTATATGTTGA 2151 44.63 MAPAPFQQLAAQNGSVETFCITRNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAMEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNKVKSTVKQVAKKVLTTSSNGALHPSRFCEKDLLQVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALSNGEMEKDTETSIFQKIGCFEEELKGILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTKLVSGERVISPGEECEKVFSALCEGKMIDPILECLKEWNGAPIPIC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4621158 4623308 + CmoCh07G009530.1 Cmo07g00953 386261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00953 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824
Cmo07g00953 716 Pfam Aromatic amino acid lyase 63 540 IPR001106 -
Cmo07g00953 716 CDD PAL-HAL 61 526 IPR001106 -
Cmo07g00953 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo07g00953 716 Gene3D - 529 650 IPR023144 -
Cmo07g00953 716 Gene3D - 16 262 IPR024083 -
Cmo07g00953 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cmo07g00953 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 21 716 - -
Cmo07g00953 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Cmo07g00953 716 PANTHER HISTIDINE AMMONIA-LYASE 21 716 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00953 Cmo-Chr7:4621158 Cmo07g00955 Cmo-Chr7:4642556 0 dispersed
Cmo07g00952 Cmo-Chr7:4609893 Cmo07g00953 Cmo-Chr7:4621158 1.66E-105 tandem
Cmo07g00953 Cmo-Chr7:4621158 Cmo07g00954 Cmo-Chr7:4630062 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00953 K10775 - csv:101218382 1302.73