Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00956 ATGGCAGCCATCCACCAAACCAATCACACTCCCTGCCCCATTACTACTCTTCCCGACCCACTCAACTGGGGTGTGGCTGCCCAGGCTCTCAAGGGAAGCCATCTCGATGAGGTCAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGCGGTGAGACTCTCACCATTTCCCAAGTGGCCGCCATTGCCACTCGTGATAATGATGTGCTGGTCCAGTTGGCCGAGTCTGCTAGAGCTGGCGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGTTACGGTGTTACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGAGCTCTTCAGAAGGAGTTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCTGCTACCAGGGCGGCCATGTTGGTGAGAATCAACACTCTTCTCCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTTTTAAATAGTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATTACTGCTTCGGGTGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGCCGACCAAACTCTAAGGCTGTTGGACAAAATGGAGAAAGCCTTGATGCAAAGGAGGCCTTTCAACAAGCTGGCATTCCTTCGGGGTTCTTTGAGTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGCTGGCTTCGATTGTTCTGTTTGAGGCCAATATCTTGGCTGTTTTGTCTGAGATTTTGTCAGCCATTTTTGCCGAAGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCTTGGATGGAAGTTCTTACATGAAAGCTGCAAAGAAATTGCATGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAGGTGATTCGATTCTCAACAAAGTCTATCGAAAGAGAGATTAACTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCGATCCATGGAGGCAACTTCCAAGGAACTCCAATTGGTGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAATGATTTCTACAACAATGGGCTTCCTTCAAATCTCTCTGCAAGCAGAAACCCGAGTTTAGATTATGGATTCAAGGGTGCAGAAATTGCCATGGCTTCTTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCACGTCCAGAGTGCAGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATCTCTTCAAGGAAAACAGCCGAAGCCATTGACATTCTGAAACTCATGTCATCAACATTTTTGGTTGCATTATGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAACGTAGTAAAGAGCACCGTGAGTGTAGTGGCCAAGAAAGTTCTCACCACAGGTGCCAACGGTGCACTTCACCCATCAAGATTCTGCGAGAAAGATCTACTGCAAGTAGTGGACAGAGAATACACCTTTGCATACGTAGATGATGCCTGCAGTATGAGTTACCCATTGATGCAAAAGTTGAGACAAGTTCTTGTGGATCATGCTCTGGGAAATGGTGAAGAGGAAAAGAACGCAAGCACTTCAATCTTCCAAAAGATTGGAGCTTTTGAAGAGGAATTAAAAGCCATGTTGCCCAAGGAAGTGGAGAATGCAAGATTGTGGTATGAAAATGGAACATCAAGCATTGAAAACCAAATTAAGGAGTGCAGATCTTACCCATTGTACAAATTTGTAAGGGAAGAGTTGGGAACTGGGCTGGTAACTGGGGAGAAGGTGATATCTCCTGGAGAAGAATGTGAGAAGGTATTCAGGGCGCTTTGTCAAGGGAAGATGATCGACCCAATTCTGGAATGCTTGAAGGAGTGGAATGGTGCTCCTATCCCCATTTGCTAG 2133 45.9 MAAIHQTNHTPCPITTLPDPLNWGVAAQALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNDVLVQLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGQNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKSTVSVVAKKVLTTGANGALHPSRFCEKDLLQVVDREYTFAYVDDACSMSYPLMQKLRQVLVDHALGNGEEEKNASTSIFQKIGAFEEELKAMLPKEVENARLWYENGTSSIENQIKECRSYPLYKFVREELGTGLVTGEKVISPGEECEKVFRALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4648520 4650652 - CmoCh07G009560.1 Cmo07g00956 386264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00956 710 Gene3D - 523 644 IPR023144 -
Cmo07g00956 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824
Cmo07g00956 710 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo07g00956 710 Gene3D - 13 256 IPR024083 -
Cmo07g00956 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Cmo07g00956 710 CDD PAL-HAL 55 520 IPR001106 -
Cmo07g00956 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Cmo07g00956 710 PANTHER HISTIDINE AMMONIA-LYASE 16 710 IPR001106 -
Cmo07g00956 710 Pfam Aromatic amino acid lyase 57 526 IPR001106 -
Cmo07g00956 710 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01229 Cmo-Chr3:9493071 Cmo07g00956 Cmo-Chr7:4648520 0 dispersed
Cmo07g00954 Cmo-Chr7:4630062 Cmo07g00956 Cmo-Chr7:4648520 0 dispersed
Cmo07g00955 Cmo-Chr7:4642556 Cmo07g00956 Cmo-Chr7:4648520 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00956 K10775 - csv:101218144 1299.65