Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00959 ATGATTACGTTTATGGATTCGAAAGAGAAAGTGAAAGAGATGGAGAAATGCTTAGATCCTCAGCTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGTCATGCCGAGCATGCTTGTGCGCCAGTTGATTTCAGTAACTGTTCTAAGGTTCCTCCATATACGCTTTGTAGAGTTTCTGCTATCAAGTTTCTTGCCGATCCTGACACGGATGAGGTCTTTGCTAAACTCAGGTTGATTCCCATTAATGGAAGTGAACTAGAGTTTGAAGATGATGGAATTGGAAGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCGTTTGCAAAGACATTGACACAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCTGAAACAATCTTCCCTCGGTTGGATTACTCGGCCGATCCACCGGTTCAGACGATTCTTGCTAAGGATGTTCATGGGGAGACATGGAAATTCAGGCACATTTACCGTGGGACGCCTCGGCGACATCTTTTAACGACGGGATGGAGTACGTTTGTTAACCATAAGAAGCTTGTGGCTGGTGATTCCATTGTGTTCTTGAGGGCTGAAAATGGAGATCTCTGCGTCGGGATTAGACGAGCAAAGAGAGGAATTGGAGATGGACCGGAACCGCCGTGTGGATGGAATCCAGCAGGTGGGAACTGTGCTGTGCCTTATGGAGCTTTCTCAACGTTCTTGAGGGAAGATGAAAACAGAGTGAACAGGACTAATGGAAAGGGGAAAGTGAAGGCTGAATCAGTCATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCCTTTGAAATAGTATACTATCCAAGAGCTAGTACTCCTGAGTTCTGTGTCAAGGCAGGGCTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCGGGTATGCGGTTCAAGATGGCGTTCGAAACCGAGGACTCTTTGCGGATAAGCTGGTTCATGGGTACCATAAACACCGTTCAGGCCGCCGACCCACTGCGCTGGCCTGAATCACCATGGAGGCTTCTACAGGTTACTTGGGACGAGCCCGATTTACTTCAGAATGTGAAACGTGTTAGCCCGTGGTTGGTCGAATTGGTATCGAACATATCTCCGATTCATCTTGCACCGTTCTCACCTCCAAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTCGATAACCAGCCTTCTATGTCGCCGTTTGCGAGTTATCTCCATGGTCCAGGCAGCCCCTTTGGTTGTCCTCCGGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCGGATTTTCATCTCAGTAAACTGCAGTCGGGTCTGTTTCCGATTCGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCGCATTCTACTCAAACGTCGAAGAAATTCGACAACGTAAAGACTCCACAGCTAATACTTTTCGGCAGACCCATACTAACCGAATTGCAGATGTCTCAAAGCTGTTCTGGTGATACCGTTTCTCCAGTTGGTACTGGAAACAGTTCGTCGGATGGAAACGGTTCTGGATCTGCACTACATCAACAAGGTCTACCAGAACGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGATGTCGAGCCTAACTTGGATACTGGCCACTGTAAAGTCTTCATGGAATCAGAAGACGTCGGTCGCACCCTCGATCTTTCTTCACTTGGGTCCTATGAAGAATTGTACAGAAAACTCGGAAACATGTTCGGCATCGACAACTCCGAGATGTTGAACCATGTCTTGTACCGGGATATCTCCGGTGCTGTCAAGCACGTCGGCGACGAACAATTCAGCGAGTTCATCAAGACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTACAACGTGA 2046 47.46 MITFMDSKEKVKEMEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACAPVDFSNCSKVPPYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELEFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPEPPCGWNPAGGNCAVPYGAFSTFLREDENRVNRTNGKGKVKAESVIEAATLAANGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSLRISWFMGTINTVQAADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNISPIHLAPFSPPRKKFRYPQHPDFPLDNQPSMSPFASYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPIRYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQTSKKFDNVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGSGSALHQQGLPERSSCENFQWYKDNRQDVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSEMLNHVLYRDISGAVKHVGDEQFSEFIKTARRLTILTDSGSNNVGATT 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4686626 4690337 + CmoCh07G009590.1 Cmo07g00959 386267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00959 681 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo07g00959 681 Gene3D - 314 388 - -
Cmo07g00959 681 Gene3D - 118 222 IPR015300 -
Cmo07g00959 681 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Cmo07g00959 681 ProSiteProfiles PB1 domain profile. 593 673 IPR000270 GO:0005515
Cmo07g00959 681 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cmo07g00959 681 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cmo07g00959 681 Gene3D - 591 677 - -
Cmo07g00959 681 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo07g00959 681 PANTHER AUXIN RESPONSE FACTOR 6 670 - -
Cmo07g00959 681 MobiDBLite consensus disorder prediction 536 569 - -
Cmo07g00959 681 CDD B3_DNA 119 220 IPR003340 GO:0003677
Cmo07g00959 681 SMART B3_2 120 222 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01235 Cmo07g00959 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00504 Cmo-Chr5:2426640 Cmo07g00959 Cmo-Chr7:4686626 3.84E-103 dispersed
Cmo07g00959 Cmo-Chr7:4686626 Cmo12g00112 Cmo-Chr12:650533 7.47E-104 dispersed
Cmo15g00471 Cmo-Chr15:2129289 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
Cmo02g00900 Cmo-Chr2:5550636 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
Cmo20g00525 Cmo-Chr20:2533242 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
Cmo03g01235 Cmo-Chr3:9536729 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
Cmo04g02692 Cmo-Chr4:19603016 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10161 PF02362 B3 1.50E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00959 - - csv:101217039 1269.99