Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00971 ATGTCGGCCGCCAAGGACTACCAAGACCCGCCTCCGACCCCATTGATCGACGTTGAGGAGTTTACTCAGTGGTCATTTTACAGAGCCGTTATCGCTGAGTTCGTCGCCACGCTTCTGTTCTTGTACATTCTTGTTCTCACTGTGATTGGATCTTCCAAGTTGTCGGACACTGAAAGCCACTGTGGTGGGGTGGGCGTTTTGGGTGTTGCCTGGGCTGTCGGTGGCATGATCTTCGTCCTTGTTTACTGTACGGCTGGAATTTCTGGAGGGCATATTAACCCGGCGGTCACGTTCGGGCTGTTATTGGCTCGAAAAATATCTCTAATCAGAGCTGTTCTTTACATTATGGCTCAATGTTTGGGGGCCATTTGTGGTTGTGGGTTAGCTAAATCGTTTCAGAAGGGTTATTACGTTCGGTACAAAGGTGGAGCCAATATGCTCTCCGATGAGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGACCCCAAGAGAAACGCTAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCAGTGTTTATGGTTCATCTAGCCACCATTCCGATCACCGGCACCGGCATAAACCCAGCTAGAAGCTTAGGAGCTGCAGTGATCTATAACGAAGCTGAAGCCTGGGATCACCATTGGATCTTTTGGGTTGGGCCCTTCATTGGAGCTGCCATTGCTGCCATTTATCATCAAGTCATAATAAGAGCAGGGGCAGTCAAAGCACTGGGCTCGTTCAGAAGTTCCTCTGCCGTATAA 822 50.12 MSAAKDYQDPPPTPLIDVEEFTQWSFYRAVIAEFVATLLFLYILVLTVIGSSKLSDTESHCGGVGVLGVAWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISLIRAVLYIMAQCLGAICGCGLAKSFQKGYYVRYKGGANMLSDEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNEAEAWDHHWIFWVGPFIGAAIAAIYHQVIIRAGAVKALGSFRSSSAV 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4762813 4764601 - CmoCh07G009710.1 Cmo07g00971 386279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00971 273 Pfam Major intrinsic protein 21 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 3 270 - -
Cmo07g00971 273 TIGRFAM MIP: MIP family channel proteins 32 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 SUPERFAMILY Aquaporin-like 20 257 IPR023271 -
Cmo07g00971 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 270 IPR034294 -
Cmo07g00971 273 CDD MIP 28 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00971 273 Gene3D Glycerol uptake facilitator protein. 13 273 IPR023271 -
Cmo07g00971 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00971 Cmo-Chr7:4762813 Cmo19g00753 Cmo-Chr19:7683024 1.72E-144 dispersed
Cmo07g00971 Cmo-Chr7:4762813 Cmo07g00973 Cmo-Chr7:4770232 1.14E-160 proximal
Cmo15g00466 Cmo-Chr15:2117137 Cmo07g00971 Cmo-Chr7:4762813 1.90E-07 wgd
Cmo18g00896 Cmo-Chr18:10199572 Cmo07g00971 Cmo-Chr7:4762813 3.24E-142 wgd
Cmo02g00893 Cmo-Chr2:5507658 Cmo07g00971 Cmo-Chr7:4762813 3.33E-162 wgd
Cmo20g00519 Cmo-Chr20:2483693 Cmo07g00971 Cmo-Chr7:4762813 4.95E-128 wgd
Cmo03g01238 Cmo-Chr3:9553475 Cmo07g00971 Cmo-Chr7:4762813 2.91E-171 wgd
Cmo04g02700 Cmo-Chr4:19632374 Cmo07g00971 Cmo-Chr7:4762813 3.40E-157 wgd
Cmo06g00371 Cmo-Chr6:1792397 Cmo07g00971 Cmo-Chr7:4762813 1.53E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00971 K09872 - csv:101215604 468.388