Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00973 ATGGCCAAGGATTCTGAAGCTGGTGGATTCGCCGCCAAGGACTACCACGACCCACCTCCGGCGCCGTTGATCGACGTCGAGGAGTTCACTCAGTGGTCATTCTACAGAGCCATCATTGCCGAGTTCATCGCCACGCTTCTGTTCTTGTACGTTACTGTTCTCACTGTCATTGGCTACAGCAGCCAGTCCGACGTCGACCAGGGGGGCCATATCTGCGGCGGGGTCGGCATTCTCGGCATCGCTTGGGCCTTTGGTGGAATGATCTTCGTTCTTGTTTACTGCACCGCTGGGATTTCCGGTGAGTTTTATGAGATTTCTGTCGAAATCAGCTTGTGGGTTTTGGTGGGTTTTAGTGGGCATATCAATCCGGCGGTGACATTTGGGTTGTTTTTGGCACGGAAAGTGTCGTTGGTGAGGGCCGTTTTGTATATGGTGGCTCAGTGTGTTGGAGCCATTTGTGGATGTGCGTTGGTCAAATCGTTTCAGAAGGGTCTCTACAATCGCTACGGCGGTGGAGCCAATTCGCTAGCTGAAGGTTACAGCACCGGCACCGGCTTAGCCGCTGAGATTATCGGAACCTTCGTTCTTGTCTACACTGTCTTCTCTGCTACGGATCCCAAGAGAAGCGCTAGAGATTCTCACATTCCTGTACTAGCACCACTCCCAATTGGGTTCGCCGTGTTCATGGTTCACCTGGCCACCATTCCGATCACCGGCACCGGTATTAACCCAGCTCGAAGCTTCGGCGCTGCGGTGGTGTTCAACCACAGCAAGCCCTGGGATGACCATTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTCTCATTGCCGCGTTTTATCACCAGTTCATATTGAGAGCTGGAGCAGTTAAAGCTCTGGGATCCTTCAGGAGTACCCACAGCGTCTAA 909 53.03 MAKDSEAGGFAAKDYHDPPPAPLIDVEEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDVDQGGHICGGVGILGIAWAFGGMIFVLVYCTAGISGEFYEISVEISLWVLVGFSGHINPAVTFGLFLARKVSLVRAVLYMVAQCVGAICGCALVKSFQKGLYNRYGGGANSLAEGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNHSKPWDDHWIFWVGPFIGALIAAFYHQFILRAGAVKALGSFRSTHSV 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4770232 4771753 + CmoCh07G009730.1 Cmo07g00973 386281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00973 302 ProSitePatterns MIP family signature. 120 128 IPR022357 -
Cmo07g00973 302 TIGRFAM MIP: MIP family channel proteins 40 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 Gene3D Glycerol uptake facilitator protein. 21 302 IPR023271 -
Cmo07g00973 302 Pfam Major intrinsic protein 110 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PRINTS Major intrinsic protein family signature 139 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 CDD MIP 36 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo07g00973 302 PANTHER AQUAPORIN PIP2-4-RELATED 6 112 - -
Cmo07g00973 302 PANTHER AQUAPORIN PIP2-4-RELATED 115 299 - -
Cmo07g00973 302 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 112 IPR034294 -
Cmo07g00973 302 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 115 299 IPR034294 -
Cmo07g00973 302 SUPERFAMILY Aquaporin-like 28 286 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01238 Cmo07g00973 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01238 Cmo-Chr3:9553475 Cmo07g00973 Cmo-Chr7:4770232 1.66E-158 dispersed
Cmo03g01239 Cmo-Chr3:9556212 Cmo07g00973 Cmo-Chr7:4770232 0 dispersed
Cmo04g01442 Cmo-Chr4:7380649 Cmo07g00973 Cmo-Chr7:4770232 1.16E-168 dispersed
Cmo04g02700 Cmo-Chr4:19632374 Cmo07g00973 Cmo-Chr7:4770232 1.53E-167 dispersed
Cmo06g00371 Cmo-Chr6:1792397 Cmo07g00973 Cmo-Chr7:4770232 6.83E-154 dispersed
Cmo07g00973 Cmo-Chr7:4770232 Cmo18g00896 Cmo-Chr18:10199572 4.40E-154 dispersed
Cmo07g00971 Cmo-Chr7:4762813 Cmo07g00973 Cmo-Chr7:4770232 1.14E-160 proximal
Cmo07g00972 Cmo-Chr7:4764962 Cmo07g00973 Cmo-Chr7:4770232 1.01E-06 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00973 K09872 - csv:101214884 525.398