Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00976 ATGAAGTTTCGATCTCTTCTTTCTACTTGTTGTTCTTCTCGATCGCTTAATGCTATGGAAAATAGCTGGCACGATAGACAAGATAATGAGGGGGTTCGTGTGTACTCTTACAACGAGCTTAAATCGGCCACCAATGGGTTTAGTGCGGCAAATAAGGTGGGAGAGGGCGGATTCGGCTCCGTTTACAAGGGTCGGCTTCGTGATGGCAGGAAGATTGCTGTGAAGGTGCTCTCTGTTGAGGTTGAATCTATGAGGGGTGAAAGGGAATTCATTGCTGAATTGACTTCACTTTCTAATATCAGACATGAAAACCTTGTTGTGCTTAAAGGGTTTCATGTTGATGGATGTCAAAGATACTTGGTCTATGATTACATGGAAAACAACAGCCTTGCTCATGCTCTTCAGGGTGTGGGGGAAAATAGAATGAGACTTAGTTGGCAAGCCAGAAAGGATATTTTGATTGGAGTAGCTCGTGGGCTTGCCTATCTTCATGAGGAAGTCAACCCGCATATAGTTCATAGAGATATAAAAGCTAGCAATATTCTTCTCGACCATAATTTTATGCCTAAACTTGCGGATTTTGGATTGGCGAAGTTGTTTGGAGAGAACCTTTCTCATGTTAGTACTCGTGTTGCTGGCACAATCGGATATCTTGCTCCTGAATATGCTGTTAGCGGGCATTTGACACGAAAATCAGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGGAGAGCAACTGTCGATTTTGATATGGAACGTGGCGAACACCACTTGGTTCAGAAGGTATGGGATCATTACAACACGAACGAGCTAGTAAAATTGATAGACCCGACACTTGACACAAACATCCGGGAAGAAGAGGCTGTTCAGTTTATGAAAATTGGCCTACTGTGTGTGCAAGAAAACACAACGAAACGACCACGAATGTCTGTTGCTGTAAGTATGTTGATGAGGGAGACCGACGTTAAAGATCATAAGATTTCACAACCAGGACATATTATCGACTTCATGGACATTAAGATGGATAAAGGAACTTCATCAACCAGTATTTTCTCAAAGGTTTCAACACCAAATAGCATGTAA 1095 42.37 MKFRSLLSTCCSSRSLNAMENSWHDRQDNEGVRVYSYNELKSATNGFSAANKVGEGGFGSVYKGRLRDGRKIAVKVLSVEVESMRGEREFIAELTSLSNIRHENLVVLKGFHVDGCQRYLVYDYMENNSLAHALQGVGENRMRLSWQARKDILIGVARGLAYLHEEVNPHIVHRDIKASNILLDHNFMPKLADFGLAKLFGENLSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDMERGEHHLVQKVWDHYNTNELVKLIDPTLDTNIREEEAVQFMKIGLLCVQENTTKRPRMSVAVSMLMRETDVKDHKISQPGHIIDFMDIKMDKGTSSTSIFSKVSTPNSM 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4795016 4797193 - CmoCh07G009760.1 Cmo07g00976 386284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00976 364 Pfam Protein kinase domain 49 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00976 364 SMART serkin_6 47 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00976 364 Gene3D Phosphorylase Kinase; domain 1 17 124 - -
Cmo07g00976 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 342 - -
Cmo07g00976 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Cmo07g00976 364 Gene3D Transferase(Phosphotransferase) domain 1 125 340 - -
Cmo07g00976 364 ProSiteProfiles Protein kinase domain profile. 47 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00976 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Cmo07g00976 364 SUPERFAMILY Protein kinase-like (PK-like) 31 327 IPR011009 -
Cmo07g00976 364 PANTHER RECEPTOR-LIKE KINASE 21 342 - -
Cmo07g00976 364 CDD STKc_IRAK 53 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00976 Cmo-Chr7:4795016 Cmo16g00508 Cmo-Chr16:2450461 3.09E-120 dispersed
Cmo07g00976 Cmo-Chr7:4795016 Cmo04g00679 Cmo-Chr4:3370962 7.28E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74482 PF00069 Pkinase 1.10E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00976 - - mcha:111013547 605.905