Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g00978 | ATGTCTGAACAAAGCTCTCAACTTTATCATCTTCCTCATAACCCTAACCCTAACCCTAACCCTAACCCTAAAAAGAAGAGAAATTTTCCAGGAAAACCAGATCCAGATGCCGAGGTGATTGCTTTATCGCCGAACGCTCTAATGGCGACGAACCGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGGGATCAGAACTTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTTAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATTTGCCCAGAGAAGTCTTGTGTTCATCATGATCCAGCTAGAGCACTTGGAGACCTGACTGGAATCAAGAAGCATTTTAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAAACTTGTGGAACTCGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTCTGCGACGCTCTAGCAGACGAAAGCAGGCTAATCTCATCGGTAGCAGCAAATTCAACCCCAAATTTCATTGCCAATTCACTCAACGAATCTCTCTTCAATTCCCAAGGCGGAATCTTTGTCCAATCAGACCATAATAACTTCCCCATCAACAACACCTTCCCTTTCCCCCAAATTCCACCCTCTAATCTCTTCCAAATCTCCAACCGAATTCTGGGTTTGAATAAAAACTCTTCAAAAACAGCTGTGAACCTCTCGTCGTTTTGCTCGAGCGGTAGCGTTGGTGGAGGAAAGTTGATTATGCCGATGTCGGCTACGGCATTGCTGCTGAAGGCAGCGCATTTCGGGTCTACGAAAAGTAATCCGTCGTACTCCGGGAATAGTGTGGGAGTTATGAGTTCGTCTTCGAGTTCGTTTGATCAGAGCAAAGGGGAGTTGCAGCGAATAGGCTCCCATGGCGGAAGTGGGAGCGGGTTGAGGGATTTTTTGGGTACGAGGGAGAGAGAAGGGAGTGGGAATATGGAGTTGGTTTCGTTAATGGAGATGTCGAAATTTGGGAGCTCTATGAGCTCGGAGATGGGGTTGAGCAAGTTCATTGGGAATGCTCGGGGATGA | 1140 | 45.26 | MSEQSSQLYHLPHNPNPNPNPNPKKKRNFPGKPDPDAEVIALSPNALMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALADESRLISSVAANSTPNFIANSLNESLFNSQGGIFVQSDHNNFPINNTFPFPQIPPSNLFQISNRILGLNKNSSKTAVNLSSFCSSGSVGGGKLIMPMSATALLLKAAHFGSTKSNPSYSGNSVGVMSSSSSSFDQSKGELQRIGSHGGSGSGLRDFLGTREREGSGNMELVSLMEMSKFGSSMSSEMGLSKFIGNARG | 379 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4810001 | 4812896 | - | CmoCh07G009780.1 | Cmo07g00978 | 386286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g00978 | 379 | Pfam | Zinc-finger double-stranded RNA-binding | 53 | 75 | IPR022755 | - | |
| Cmo07g00978 | 379 | Gene3D | Classic Zinc Finger | 36 | 105 | - | - | |
| Cmo07g00978 | 379 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Cmo07g00978 | 379 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
| Cmo07g00978 | 379 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 14 | 316 | - | - | |
| Cmo07g00978 | 379 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 75 | IPR013087 | - | |
| Cmo07g00978 | 379 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 14 | 316 | - | - | |
| Cmo07g00978 | 379 | SUPERFAMILY | beta-beta-alpha zinc fingers | 52 | 149 | IPR036236 | - | |
| Cmo07g00978 | 379 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - | |
| Cmo07g00978 | 379 | SMART | c2h2final6 | 94 | 124 | IPR013087 | - | |
| Cmo07g00978 | 379 | SMART | c2h2final6 | 129 | 149 | IPR013087 | - | |
| Cmo07g00978 | 379 | MobiDBLite | consensus disorder prediction | 310 | 342 | - | - | |
| Cmo07g00978 | 379 | Gene3D | Classic Zinc Finger | 107 | 185 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo07g00978 | Cmo14g00196 | CCT | |
| Cmo06g00365 | Cmo07g00978 | CCT | |
| Cmo07g00978 | Cmo14g00196 | ECH | |
| Cmo06g00365 | Cmo07g00978 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g00978 | Cmo-Chr7:4810001 | Cmo08g00742 | Cmo-Chr8:4706485 | 3.50E-113 | dispersed | |
| Cmo14g00196 | Cmo-Chr14:889620 | Cmo07g00978 | Cmo-Chr7:4810001 | 1.67E-116 | wgd | |
| Cmo06g00365 | Cmo-Chr6:1771849 | Cmo07g00978 | Cmo-Chr7:4810001 | 1.55E-96 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10162 | PF12171 | zf-C2H2_jaz | 5.20E-05 | CL0361 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g00978 | K25870 | - | csv:101221389 | 425.631 |