Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00978 ATGTCTGAACAAAGCTCTCAACTTTATCATCTTCCTCATAACCCTAACCCTAACCCTAACCCTAACCCTAAAAAGAAGAGAAATTTTCCAGGAAAACCAGATCCAGATGCCGAGGTGATTGCTTTATCGCCGAACGCTCTAATGGCGACGAACCGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGGGATCAGAACTTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTTAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATTTGCCCAGAGAAGTCTTGTGTTCATCATGATCCAGCTAGAGCACTTGGAGACCTGACTGGAATCAAGAAGCATTTTAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAAACTTGTGGAACTCGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTCTGCGACGCTCTAGCAGACGAAAGCAGGCTAATCTCATCGGTAGCAGCAAATTCAACCCCAAATTTCATTGCCAATTCACTCAACGAATCTCTCTTCAATTCCCAAGGCGGAATCTTTGTCCAATCAGACCATAATAACTTCCCCATCAACAACACCTTCCCTTTCCCCCAAATTCCACCCTCTAATCTCTTCCAAATCTCCAACCGAATTCTGGGTTTGAATAAAAACTCTTCAAAAACAGCTGTGAACCTCTCGTCGTTTTGCTCGAGCGGTAGCGTTGGTGGAGGAAAGTTGATTATGCCGATGTCGGCTACGGCATTGCTGCTGAAGGCAGCGCATTTCGGGTCTACGAAAAGTAATCCGTCGTACTCCGGGAATAGTGTGGGAGTTATGAGTTCGTCTTCGAGTTCGTTTGATCAGAGCAAAGGGGAGTTGCAGCGAATAGGCTCCCATGGCGGAAGTGGGAGCGGGTTGAGGGATTTTTTGGGTACGAGGGAGAGAGAAGGGAGTGGGAATATGGAGTTGGTTTCGTTAATGGAGATGTCGAAATTTGGGAGCTCTATGAGCTCGGAGATGGGGTTGAGCAAGTTCATTGGGAATGCTCGGGGATGA 1140 45.26 MSEQSSQLYHLPHNPNPNPNPNPKKKRNFPGKPDPDAEVIALSPNALMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALADESRLISSVAANSTPNFIANSLNESLFNSQGGIFVQSDHNNFPINNTFPFPQIPPSNLFQISNRILGLNKNSSKTAVNLSSFCSSGSVGGGKLIMPMSATALLLKAAHFGSTKSNPSYSGNSVGVMSSSSSSFDQSKGELQRIGSHGGSGSGLRDFLGTREREGSGNMELVSLMEMSKFGSSMSSEMGLSKFIGNARG 379
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 4810001 4812896 - CmoCh07G009780.1 Cmo07g00978 386286
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00978 379 Pfam Zinc-finger double-stranded RNA-binding 53 75 IPR022755 -
Cmo07g00978 379 Gene3D Classic Zinc Finger 36 105 - -
Cmo07g00978 379 MobiDBLite consensus disorder prediction 1 36 - -
Cmo07g00978 379 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Cmo07g00978 379 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 14 316 - -
Cmo07g00978 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Cmo07g00978 379 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 316 - -
Cmo07g00978 379 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
Cmo07g00978 379 SMART c2h2final6 53 75 IPR013087 -
Cmo07g00978 379 SMART c2h2final6 94 124 IPR013087 -
Cmo07g00978 379 SMART c2h2final6 129 149 IPR013087 -
Cmo07g00978 379 MobiDBLite consensus disorder prediction 310 342 - -
Cmo07g00978 379 Gene3D Classic Zinc Finger 107 185 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00978 Cmo-Chr7:4810001 Cmo08g00742 Cmo-Chr8:4706485 3.50E-113 dispersed
Cmo14g00196 Cmo-Chr14:889620 Cmo07g00978 Cmo-Chr7:4810001 1.67E-116 wgd
Cmo06g00365 Cmo-Chr6:1771849 Cmo07g00978 Cmo-Chr7:4810001 1.55E-96 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10162 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00978 K25870 - csv:101221389 425.631