Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00981 ATGTTAAAAGTAAACACTCAACAAACCAACCTCTCTTCAGATCTGAATCTTCTCTTTCACTCTTTTCAGGGGTTTTCGCTAAGGAATGTAAAGAAGATGGGAAAGAAAGAAACATGGTTTTCTTCTGTAAAGAAGGCTCTAAGTCCAGATCCCAAAGAGAAGAGAGATCAGCAAAACTCGAAGAAATCGAAGAAGAAATGGTTTGGAAAGCAAAAGCATTGCTATCCAGATTCTACACAGGCTGTGGCTGAGCCATCACCACCGCCCCAGCAAGAACAGGCACATATAGTTCATTCAGTGAGTGAAGAACACAATGAGCCTTGCTCTGTTGAAGTTGCTACTGCAACAGAAGTGACTTCTGCAGCTGCTCAGGCTAATGAAGCAAGTGTTTCTACTTTTGAGCCTAATGTTGCTACTCCGTTTGTTGCTGCCAAAGTTGTGCACGTCGCGACGGAGACACGATTTGTTGGACTATCTAAGGAGGAAGTTGCAGCAATCAAGATCCAAACTGTGTTTCGTGGATACCTTGCAAGAAGGGCGTTACGGGCGTTACGAGGATTGGTGAGGCTGAAATCATTGATGGAGAGTTCTACAGTGAAACGACAAGCCTCGAACACACTTCGGTGTATGCAGACGTTGGCTCGTGTTCAATCTCAGATTCATTTTAGGAGGGTTAGGATGTTGGAGGAGAATCAAGCTCTACAGAAACAACTCCTTCAAAAGCATGCCAAAGAGCTCGAGAGCTTGCGGATTGGGGAGGAATGGGATGACAGTTTACAATCAAAGGAGCAGATTGAAGCTGGTCTACTGAGCAAATATGAGGCTGCAATGAGAAGGGAGAGAGCCCTGGCATATGCCTTCACTCATCAGCAAACCTGGAAGAATTCTGCAAAGTCTGTAAACCCAGCATTCATGGATCCAAGCAATCCCACCTGGGGTTGGAGCTGGTCGGAGCGATGGAGCGGAGCTCGAGTACACGATGCTCCTGACCTGACAGGAAAAGAGTCAAACACCAGTCATTCCGGTAAGAAGACGACGAGTCGTGGCATTGTTGGCGGAGAAATCAGCAAATCATTCGCTCGATTTCAGCTGAACTCAGAGATGGATTCCCCAACAGGCAGCCAGAAAACAACTCACTCTGCTTTCCAACCCTCCTCAACTCCTTCCAAGCTAGCTTCATCTCCCAAAGTAAAAAAAATGAAGCCTCCAAGCCCAAGAATCCTCATGCTTCACGACGACGACTCGAAAAGTATGGTCAGCAGTATGCAGTCCGAAAGATCACGAAGGCACAGCACAGGAGGAGGAGGACCTTCGGCAAGGGACGACGATAACATGTCAACCACGAGCGCCGTTCGGAGTTACATGACACCAACTGAATCAGCAAGAGCAAAATCCAGATTGCAGAGTTCATTAGGAACTCCAGAGAAAGGATCTTCAGCAACAGCAAAGAAACGTCTCTCGTACCCTCCTTCACCCGCCTTGGCAAGACGACATTCAGGTCCGCCCAAGCTCGAAGGCGACGTCGATATCGGAAACAGCATCAGCAATGGAGTTGGTGGCTAA 1563 47.54 MLKVNTQQTNLSSDLNLLFHSFQGFSLRNVKKMGKKETWFSSVKKALSPDPKEKRDQQNSKKSKKKWFGKQKHCYPDSTQAVAEPSPPPQQEQAHIVHSVSEEHNEPCSVEVATATEVTSAAAQANEASVSTFEPNVATPFVAAKVVHVATETRFVGLSKEEVAAIKIQTVFRGYLARRALRALRGLVRLKSLMESSTVKRQASNTLRCMQTLARVQSQIHFRRVRMLEENQALQKQLLQKHAKELESLRIGEEWDDSLQSKEQIEAGLLSKYEAAMRRERALAYAFTHQQTWKNSAKSVNPAFMDPSNPTWGWSWSERWSGARVHDAPDLTGKESNTSHSGKKTTSRGIVGGEISKSFARFQLNSEMDSPTGSQKTTHSAFQPSSTPSKLASSPKVKKMKPPSPRILMLHDDDSKSMVSSMQSERSRRHSTGGGGPSARDDDNMSTTSAVRSYMTPTESARAKSRLQSSLGTPEKGSSATAKKRLSYPPSPALARRHSGPPKLEGDVDIGNSISNGVGG 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4829625 4834677 + CmoCh07G009810.1 Cmo07g00981 386289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00981 520 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 33 514 - -
Cmo07g00981 520 MobiDBLite consensus disorder prediction 327 354 - -
Cmo07g00981 520 MobiDBLite consensus disorder prediction 416 431 - -
Cmo07g00981 520 SMART iq_5 160 182 IPR000048 GO:0005515
Cmo07g00981 520 MobiDBLite consensus disorder prediction 47 63 - -
Cmo07g00981 520 Pfam IQ calmodulin-binding motif 164 182 IPR000048 GO:0005515
Cmo07g00981 520 ProSiteProfiles IQ motif profile. 161 189 IPR000048 GO:0005515
Cmo07g00981 520 MobiDBLite consensus disorder prediction 441 477 - -
Cmo07g00981 520 MobiDBLite consensus disorder prediction 367 520 - -
Cmo07g00981 520 MobiDBLite consensus disorder prediction 367 393 - -
Cmo07g00981 520 Gene3D - 148 189 - -
Cmo07g00981 520 MobiDBLite consensus disorder prediction 44 101 - -
Cmo07g00981 520 PANTHER IQ-DOMAIN 5-RELATED 33 514 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00353 Cmo07g00981 CCT
Cmo06g00353 Cmo07g00981 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01429 Cmo-Chr4:7278716 Cmo07g00981 Cmo-Chr7:4829625 1.60E-58 dispersed
Cmo07g00981 Cmo-Chr7:4829625 Cmo10g00895 Cmo-Chr10:4380090 8.49E-43 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo07g00981 Cmo-Chr7:4829625 8.50E-116 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo07g00981 Cmo-Chr7:4829625 4.08E-64 wgd
Cmo04g02721 Cmo-Chr4:19731029 Cmo07g00981 Cmo-Chr7:4829625 7.31E-122 wgd
Cmo06g00353 Cmo-Chr6:1719317 Cmo07g00981 Cmo-Chr7:4829625 1.08E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00981 - - csv:101203393 746.888