Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00986 | ATGTTGGATCTCAATCTCTGTATTCTCTCCGGAGATTCCGCCTCCGCCTCCGGTTCCGGTTCCGGTTCCGCCGATCATTCCAACACCACCGCCGACGAGGATTTCTCTTCCAACGTTAACTCTGGTTTCACTTTCTCTTTCAGTATCCTCAACAACAACGGCACCGATAATCAACTTGACCGGACGGCCCTGTTTCACCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATCAGTCTGTTAATCCGGTGAAGAAGGGACGGCGAGGCCCCAAATCAAGAAGCTCTCAGTATCGTGGGGTTACTTGTTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAACGGGAAGCAAGTCTATTTGGGCGGTTTTGACACGGCCCATTCTGCAGCGAGGGCTTACGATCGAGCGGCAATCAAGTTTCGAGGAGTTCATGCGGATATTAACTTCGATATCGGGGACTACAGAGAGGAGATTAAAGAGATGAGGAATTTGAGTAAAGAGGAGTTTGTGCACATTCTTCGACGGCAGAGCAATGGGTTTTCGCGAGGGAGTTCCAAATACAGAGGGGTTACTCTCCATAAGTGTGGCCGATGGGAGGCTCGTATGGGCCAGTTTTTAGGGAAGAAGTATGTGTACCTTGGGCTGTTTGATAGTGAGGTAGAAGCAGCAAGAGCATATGATAAGGCAGCCATAAAACACAACGGAAGGGAAGCTGTAACCAATTTTGATCAGAGCTGTTATTATGGCATGGAGATTGCCTTTGAATCTGAAAGCCATGGCGATATTGACCTGAGCTTGGGCATTGCTCCTCCATGTCCACCCCAACACCAAACCGATAACCGGAGTTGGCCGATCCCAACCCCCTACGGCGGAGCATCCTCACTCCCGTTCTTCTCCGCCCCAGCAGCATCATCAGGATTCCCTTCTCCCGCCCTCGCCTCGCCACCTTCTTCCACCCTCACCTTTCCTCCGCTACCACATTCCCCCCTCTATTTCCGCTGCTAG | 1017 | 51.92 | MLDLNLCILSGDSASASGSGSGSADHSNTTADEDFSSNVNSGFTFSFSILNNNGTDNQLDRTALFHPVAGVCSQRKWLDQSVNPVKKGRRGPKSRSSQYRGVTCYRRTGRWESHIWDNGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFDIGDYREEIKEMRNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEVEAARAYDKAAIKHNGREAVTNFDQSCYYGMEIAFESESHGDIDLSLGIAPPCPPQHQTDNRSWPIPTPYGGASSLPFFSAPAASSGFPSPALASPPSSTLTFPPLPHSPLYFRC | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4842641 | 4845235 | - | CmoCh07G009860.1 | Cmo07g00986 | 386294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00986 | 338 | Gene3D | AP2/ERF domain | 189 | 248 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | Gene3D | AP2/ERF domain | 97 | 155 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | CDD | AP2 | 189 | 249 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | MobiDBLite | consensus disorder prediction | 270 | 289 | - | - | |
Cmo07g00986 | 338 | ProSiteProfiles | AP2/ERF domain profile. | 98 | 154 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | CDD | AP2 | 97 | 155 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | ProSiteProfiles | AP2/ERF domain profile. | 190 | 247 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 280 | - | - | |
Cmo07g00986 | 338 | PRINTS | Ethylene responsive element binding protein signature | 191 | 202 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | PRINTS | Ethylene responsive element binding protein signature | 229 | 249 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | MobiDBLite | consensus disorder prediction | 13 | 33 | - | - | |
Cmo07g00986 | 338 | SUPERFAMILY | DNA-binding domain | 97 | 155 | IPR016177 | GO:0003677 | |
Cmo07g00986 | 338 | SMART | rav1_2 | 190 | 253 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | SMART | rav1_2 | 98 | 160 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | SUPERFAMILY | DNA-binding domain | 189 | 248 | IPR016177 | GO:0003677 | |
Cmo07g00986 | 338 | Pfam | AP2 domain | 189 | 237 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | Pfam | AP2 domain | 98 | 146 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00986 | 338 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 280 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00986 | Cmo-Chr7:4842641 | Cmo07g00637 | Cmo-Chr7:2876799 | 5.07E-54 | dispersed | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo07g00986 | Cmo-Chr7:4842641 | 1.08E-103 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo07g00986 | Cmo-Chr7:4842641 | 5.53E-97 | wgd | |
Cmo20g00493 | Cmo-Chr20:2325892 | Cmo07g00986 | Cmo-Chr7:4842641 | 5.59E-105 | wgd | |
Cmo04g00269 | Cmo-Chr4:1358706 | Cmo07g00986 | Cmo-Chr7:4842641 | 3.89E-52 | wgd | |
Cmo04g01310 | Cmo-Chr4:6668332 | Cmo07g00986 | Cmo-Chr7:4842641 | 3.31E-09 | wgd | |
Cmo06g00342 | Cmo-Chr6:1658640 | Cmo07g00986 | Cmo-Chr7:4842641 | 4.09E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10164 | PF00847 | AP2 | 1.50E-09 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00986 | K09284 | - | csv:101211008 | 420.624 |