Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00986 ATGTTGGATCTCAATCTCTGTATTCTCTCCGGAGATTCCGCCTCCGCCTCCGGTTCCGGTTCCGGTTCCGCCGATCATTCCAACACCACCGCCGACGAGGATTTCTCTTCCAACGTTAACTCTGGTTTCACTTTCTCTTTCAGTATCCTCAACAACAACGGCACCGATAATCAACTTGACCGGACGGCCCTGTTTCACCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATCAGTCTGTTAATCCGGTGAAGAAGGGACGGCGAGGCCCCAAATCAAGAAGCTCTCAGTATCGTGGGGTTACTTGTTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAACGGGAAGCAAGTCTATTTGGGCGGTTTTGACACGGCCCATTCTGCAGCGAGGGCTTACGATCGAGCGGCAATCAAGTTTCGAGGAGTTCATGCGGATATTAACTTCGATATCGGGGACTACAGAGAGGAGATTAAAGAGATGAGGAATTTGAGTAAAGAGGAGTTTGTGCACATTCTTCGACGGCAGAGCAATGGGTTTTCGCGAGGGAGTTCCAAATACAGAGGGGTTACTCTCCATAAGTGTGGCCGATGGGAGGCTCGTATGGGCCAGTTTTTAGGGAAGAAGTATGTGTACCTTGGGCTGTTTGATAGTGAGGTAGAAGCAGCAAGAGCATATGATAAGGCAGCCATAAAACACAACGGAAGGGAAGCTGTAACCAATTTTGATCAGAGCTGTTATTATGGCATGGAGATTGCCTTTGAATCTGAAAGCCATGGCGATATTGACCTGAGCTTGGGCATTGCTCCTCCATGTCCACCCCAACACCAAACCGATAACCGGAGTTGGCCGATCCCAACCCCCTACGGCGGAGCATCCTCACTCCCGTTCTTCTCCGCCCCAGCAGCATCATCAGGATTCCCTTCTCCCGCCCTCGCCTCGCCACCTTCTTCCACCCTCACCTTTCCTCCGCTACCACATTCCCCCCTCTATTTCCGCTGCTAG 1017 51.92 MLDLNLCILSGDSASASGSGSGSADHSNTTADEDFSSNVNSGFTFSFSILNNNGTDNQLDRTALFHPVAGVCSQRKWLDQSVNPVKKGRRGPKSRSSQYRGVTCYRRTGRWESHIWDNGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFDIGDYREEIKEMRNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEVEAARAYDKAAIKHNGREAVTNFDQSCYYGMEIAFESESHGDIDLSLGIAPPCPPQHQTDNRSWPIPTPYGGASSLPFFSAPAASSGFPSPALASPPSSTLTFPPLPHSPLYFRC 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4842641 4845235 - CmoCh07G009860.1 Cmo07g00986 386294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00986 338 Gene3D AP2/ERF domain 189 248 IPR036955 GO:0003700|GO:0006355
Cmo07g00986 338 Gene3D AP2/ERF domain 97 155 IPR036955 GO:0003700|GO:0006355
Cmo07g00986 338 CDD AP2 189 249 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 MobiDBLite consensus disorder prediction 270 289 - -
Cmo07g00986 338 ProSiteProfiles AP2/ERF domain profile. 98 154 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 ProSiteProfiles AP2/ERF domain profile. 190 247 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 280 - -
Cmo07g00986 338 PRINTS Ethylene responsive element binding protein signature 191 202 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 PRINTS Ethylene responsive element binding protein signature 229 249 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 MobiDBLite consensus disorder prediction 13 33 - -
Cmo07g00986 338 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Cmo07g00986 338 SMART rav1_2 190 253 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 SMART rav1_2 98 160 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 SUPERFAMILY DNA-binding domain 189 248 IPR016177 GO:0003677
Cmo07g00986 338 Pfam AP2 domain 189 237 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 Pfam AP2 domain 98 146 IPR001471 GO:0003700|GO:0006355
Cmo07g00986 338 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00986 Cmo-Chr7:4842641 Cmo07g00637 Cmo-Chr7:2876799 5.07E-54 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo07g00986 Cmo-Chr7:4842641 1.08E-103 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo07g00986 Cmo-Chr7:4842641 5.53E-97 wgd
Cmo20g00493 Cmo-Chr20:2325892 Cmo07g00986 Cmo-Chr7:4842641 5.59E-105 wgd
Cmo04g00269 Cmo-Chr4:1358706 Cmo07g00986 Cmo-Chr7:4842641 3.89E-52 wgd
Cmo04g01310 Cmo-Chr4:6668332 Cmo07g00986 Cmo-Chr7:4842641 3.31E-09 wgd
Cmo06g00342 Cmo-Chr6:1658640 Cmo07g00986 Cmo-Chr7:4842641 4.09E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10164 PF00847 AP2 1.50E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00986 K09284 - csv:101211008 420.624