Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00992 ATGAGTGCTAATGCCGACAGGCACAAAGTGAAAGAGTTAAGAGGACCAAATTGTAACGCACAGGATGGGAATGGAAGTGTGAACGATGGTGTGTCTGGAAGGGAACAGAGACCGGTGGAGGAAAATGAGTTGAAGGTCAATGGATTGACTAGAAATGCAGAAGATGGGCGAAATCCTACTGTTCAAGCCCAGGACATTGTACAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAACGATGACTCCACTCGCCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGGTGCTAGAAGATCTGACAAATCACATAGATCTTGTCTTAACAGAGGTGGTCATGCCTTGCTTATCGGGCATCGGTCTTTTATGCAAGATTATGAGCCATAAAACAAGGAAGAATATACCTGTGATTATGATGTCTTCTCATGACTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGTCATAGTTCTAGCGGTAGTGGAAGTGAAAGTGGCACGCAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTCAAAAATCAGATAACAACACCGGGAGCAATGAAGAAGAAGAAGACAATGAGAGCATTGGCTTCAATATTGGAGATGGAAGTGACGATGGCAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAGGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAGCGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGGTAATAACGTGCCACCTGTTTTGACAGCCGAGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTTCCGTGGGTAGAGTTGAATTAGGCGTGCACATAAATCTAGATTTACAACTTGAACTGTCTGCGGAACATCCAACCAAGCTAGCTAACAGACAACAGAATATTATGCTCGAGATAGGATCCAATGGATTTAATGAGCAGTTCAACAAAGGACAGCTTGACCTCAACTCTGAGAATCCATCCAGCAAACTCAAGTACGAACAAACAAATGTTACTGGTCTTGCTACAAATCTTAAAGATTCTAAGTTGGATGTCACAGTGTTTGAGGCACCAACCAGCAATCCCAAGATAGACATTAAGAATAAAGATGTTACAGATTCAGGAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCAGACCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCGAACTGGGAATGCTGGAAGTAACTCTTCTCCTGTTCTTGGCTTAGAAGTTACAAACCAAGAGAACATGCAAGATATTCGATCTCATTCGAGTGGTAATCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACGAATAATGCATTTTCCAAGTCCATAGTCACTAATAACAAGTCAGCAATGGCATCCACAGTCAACTGTTTGAACCCGTTGGCCCAACCTATTAAGAATGACAGTCTATCTGTTCCTCAGCAAGCTGATACTATCAATAACGGTACAATTACAACAATTCAAACTCAGTCTAATTGTGTGCACGGGGAATCTCAAATTCAGCAACTTTGTCACCCGTATGATCACACTCATCTGCTTGCCCAAAATAATCAACAAATGTCATCGGAGCGTAATGATTTTTCATTAAAGAAAATATCAGCTGCGACACATTGTGGGTCATCCAATGTGTTAAATGGCCCTGTAGAAGGTAATGCAGCAAATTATAGTGTGAATGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGCCGGAAAAGTCGAAGTGGGGATGCCAGTGGAAGTGGTAGTGGAAGTGGAAACGAAGTGGACCAAGACAAAGTCTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCAGAAACGGAAGGAAAGATGCTTCCATAAAAAGGTCCGATACCAAGGCAGAAAGAAATTGGCAGAACAGAGGCCCCGTGTGAGGGGACAGTTCGTGAGACAAAACACAAGCGAAAACACGAGCAATAAATGTCCATGTGCATTTGGGAAAATAGAAAAATTAGAGTGTACCATTTTAGACAGAAAAATGATGTTTTTACTTAATAATTCTAAATTAGACAGACAAAAGCTGAACTGGACTCTGTTGCCAGTGGCTACTGGACTTCTAATTCAAGAAGGCCTTCTGCCTTTCTGCATCAGAAAACTCTACTTTAGTTTGTGTTTGGACACAATACAGCATAAGCAGAATGCGCATCTTTTTTCTTTTCCTGCGTACATCCAAGGCTCCAGCACGTTCTTGTGCGACAATTTTGACACTAAATTCTAG 2631 42.46 MSANADRHKVKELRGPNCNAQDGNGSVNDGVSGREQRPVEENELKVNGLTRNAEDGRNPTVQAQDIVQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKVLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVQKSDNNTGSNEEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFGNNVPPVLTAECQVQKKQLETVSVGRVELGVHINLDLQLELSAEHPTKLANRQQNIMLEIGSNGFNEQFNKGQLDLNSENPSSKLKYEQTNVTGLATNLKDSKLDVTVFEAPTSNPKIDIKNKDVTDSGEFPSLELGLKRLRGVQTTGKADQDERNVLRRSDSSAFSRYNAGSNSNKTRTGNAGSNSSPVLGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVTNNKSAMASTVNCLNPLAQPIKNDSLSVPQQADTINNGTITTIQTQSNCVHGESQIQQLCHPYDHTHLLAQNNQQMSSERNDFSLKKISAATHCGSSNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRKSRSGDASGSGSGSGNEVDQDKVSQREAALTKFRQKRKERCFHKKVRYQGRKKLAEQRPRVRGQFVRQNTSENTSNKCPCAFGKIEKLECTILDRKMMFLLNNSKLDRQKLNWTLLPVATGLLIQEGLLPFCIRKLYFSLCLDTIQHKQNAHLFSFPAYIQGSSTFLCDNFDTKF 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4870674 4881623 + CmoCh07G009920.1 Cmo07g00992 386300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00992 876 MobiDBLite consensus disorder prediction 263 278 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 1 15 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 215 242 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 475 504 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 458 504 - -
Cmo07g00992 876 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Cmo07g00992 876 MobiDBLite consensus disorder prediction 698 720 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 459 474 - -
Cmo07g00992 876 ProSiteProfiles CCT domain profile. 727 769 IPR010402 GO:0005515
Cmo07g00992 876 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Cmo07g00992 876 CDD psREC_PRR 93 196 - -
Cmo07g00992 876 Gene3D - 90 260 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 34 50 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 665 725 - -
Cmo07g00992 876 SMART REC_2 91 206 IPR001789 GO:0000160
Cmo07g00992 876 MobiDBLite consensus disorder prediction 215 300 - -
Cmo07g00992 876 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 28 759 - -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 665 691 - -
Cmo07g00992 876 Pfam CCT motif 727 769 IPR010402 GO:0005515
Cmo07g00992 876 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 759 IPR045279 GO:0009736
Cmo07g00992 876 MobiDBLite consensus disorder prediction 1 58 - -
Cmo07g00992 876 SUPERFAMILY CheY-like 89 215 IPR011006 -
Cmo07g00992 876 MobiDBLite consensus disorder prediction 516 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00992 Cmo-Chr7:4870674 Cmo14g02228 Cmo-Chr14:15799629 5.04E-49 dispersed
Cmo13g01203 Cmo-Chr13:9454384 Cmo07g00992 Cmo-Chr7:4870674 5.26E-08 dispersed
Cmo03g00476 Cmo-Chr3:5175369 Cmo07g00992 Cmo-Chr7:4870674 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10165 PF00072 Response_reg 4.90E-20 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00992 K12129 - csv:101210765 1209.51