Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01008 ATGGGAAACGCCCATGGCCACCGCAAGCATTTCAACCATGGTGTAAATTCCTCTCCATCCACTAACGCTCATTCTCCCTCCAATAAATACGCGCCATCTGGATCAGCTCCTCCAATTTCGACCTCCACGGCTGAGATGGAGTCCTTGCCCTATGCCCTCGTTGATTCGAGACTTCGTGCCCTTGCCGGTCAGGCCGAGGGATTTGGCCGCGCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGCGTTACTAATTTGGAAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCTCTTTGGATTATCTTCGAAGTTTCGGGCACAATTCACTTGTCTTCGTATTTGAATGTGTCATCTTTTAAGACTGTAGACGGTCGTGGTCAAAGGATAAAGCTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATATTGATGGAATTCAAATTAAACCGAATTCCCGCCACATATGGATAGACCGATGCAGCCTCCAAGACTACGACGACGGGTTGATTGATATCACCCGGGGAAGTACAGATATCACTATTTCTAGGTGTCGTTTCTCACGGCATGACAAAACAATGCTCATTGGAGCCGATCCCTCTCACGTTGGCGACCGATGTATCCGTGTAACTATCCACCACTGTTTTTTCGATGGTACACGTCAGCGACATCCACGTGTTCGATATGGTAAAGTACATCTTTACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGCGTAGAATCACAGATACACTCTCAGTGCAACATATACGAAGCGGGTCAGAAAAAGGTGGCGTTCAAATATCTAACTGAGAAGGCAACAGACAAGGAAGAACCTTCAAGTGGGTGCATATGGTCTGAGGGAGATTTATTTGTAAGTGGCACTCAAAGTGGGCTGCTGGCTGCCACCGCCGGACAAAGCATGTTTCATCCTTCAGATCATTACTCTGCTTGGACTGTGGAACCTCCCACCGATGCTCTGAAACAGATACTCCAACATTGTACTGGTTGCCAAAACATCCCTAGGCCCTGTGATCTGCCACTGGTACCTTAG 1131 47.3 MGNAHGHRKHFNHGVNSSPSTNAHSPSNKYAPSGSAPPISTSTAEMESLPYALVDSRLRALAGQAEGFGRAAIGGLHGSVYCVTNLEDDGPGSLRFGCRMKEPLWIIFEVSGTIHLSSYLNVSSFKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLQDYDDGLIDITRGSTDITISRCRFSRHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIHSQCNIYEAGQKKVAFKYLTEKATDKEEPSSGCIWSEGDLFVSGTQSGLLAATAGQSMFHPSDHYSAWTVEPPTDALKQILQHCTGCQNIPRPCDLPLVP 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4979338 4982960 + CmoCh07G010080.1 Cmo07g01008 386316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01008 376 MobiDBLite consensus disorder prediction 13 42 - -
Cmo07g01008 376 Gene3D - 52 359 IPR012334 -
Cmo07g01008 376 SUPERFAMILY Pectin lyase-like 62 369 IPR011050 -
Cmo07g01008 376 MobiDBLite consensus disorder prediction 1 42 - -
Cmo07g01008 376 PANTHER PECTATE LYASE 43 369 - -
Cmo07g01008 376 PANTHER PECTATE LYASE 18-RELATED 43 369 IPR045032 GO:0030570
Cmo07g01008 376 SMART amb_all 76 289 IPR002022 -
Cmo07g01008 376 Pfam Pectate lyase 120 281 IPR002022 -
Cmo07g01008 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Cmo07g01008 376 PRINTS Pollen allergen Amb family signature 244 263 IPR018082 -
Cmo07g01008 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01008 Cmo-Chr7:4979338 Cmo03g00574 Cmo-Chr3:5590040 2.67E-52 dispersed
Cmo03g00463 Cmo-Chr3:5114304 Cmo07g01008 Cmo-Chr7:4979338 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01008 K01728 - csv:101219724 681.404