Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01039 ATGGGAAATCGAATTGGGAAAATTGGCCGCTGTTTCGCCGGCGACGGCGATATCTCCCGCCGGTACGATCCCGCCGACATTATTGTCGACCCTCATGATGGCGGTTTCGGTCACTCCTTCTATTATCTCCCACCCGACCCACATACCATCTCCTCTTCTAAAGATTTCTCCGACGAGTACATCTCTCCGGCAACCACCATTTTTCGGTCGATTTCCGGCGCTTCTGTAAGCGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTTGATCTCTATCCTTACAGCACCACGTTTGATCGGGCTGCTGCTTTTGATTGCTCGAATTCCTTCGCCTCCGTGCCGTTGCAGCCGGTGCCTCGCCACTCGGTGTCGGGAAATTCCGGCGGATTCCCTTATTCGGGTCCGATTGAGAGAGGGTTTTTATCTGGACCCTTGGCCAGCCGGAACGAATCGGGTCCTATTGATCGTGGGGTTTGTTCTGGCCCGATTGAAAAGAGCGCCGTTGGACCCGAGAAATTACGGCGGAGCTTCTCTCACAGCGGCGTTGGAGATAGACAACCCAAATCGAAAAGAAGAAGTCTCATTCGGATTCTGAAGAAAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCTGTGAGTTCGAGAGTGAGAGAATCGGAATCGTACAAACACAACGAAAATGCTGCAGCTACTCAGACTCAAAGCAGTGTCCATTTGAGCAGCCATGCGAGCTTGGCGCCGGAAGACGACGGCGATTACTTTCTCGGCGGCCAGAGCGTACAGTGGGCACAGGGGAAGGCCGGTGAGGACAGAGTTCACGTGGTGATTTCCGAGGACAATGGTTGGGTTTTCGTCGGAATTTACGACGGATTCAACGGCCCTGATGCTCCTGATTACTTACTCGCTAATCTCTATGCTGCCGTTCTAAAAGAACTCAAGGGTTTAATTTGGAATGATAAGTTTGATTCAACTGCAACTTCGTCTTCCATGAACTCATCAAACTCTGCTTCAATTGAGGAAGAAGATGGACTAACCCACCTGAAAAATCATCAATCTACAGAGAATTTCCCTGCGGGAAACAAGATGGTGAATTTGGAAGCTGAATCGATGAGGAAAAGAGAGAGAGTTTATAATACAAATTACAGGACGAGTCAGCTGATGAAGAGGGCTGATCAGAATCCCAAGACATGGAAATGTGAATGGGAAAGGGAAAGATTAGAATTCGACGGGAAGATGAACAATAAACAATTGGATCATCATCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAAGTGTTAAATGCTCTGTCTCAAGCATTGAGAAAAACAGAGGAAGCATATCTACAAAATGCAGACAAGATGGTAACAAGAAACCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTCATGTTGATGAGAGGAGAAGATGTGTACTTGATGAATGTCGGAGACAGCCGTGCTATTGTAGCGCAGCAACTCGAACCAGATTTCGGGTTTGGAAAGCAATACAGAGACTTGGAGAGAATCAATGAAGGAACACTACGAGTATTTGAATCCTCTAATGGTGTGGAGTTTGAAAGGTTAACAACCTTAGCCTCCCATCAGCTTACAATGGACCACAGCACCTACACAGAGGAGGAAGTCCAGAGGATCAAGAAGGCTCATCCCAACGATGCTTCAGCAATTATGAACGATAGGGTGAAAGGTTATTTGAAAATTACTCGGGCTTTTGGAGCTGGCTTTCTCAAACAGCCAAAGTGGAATGATGCACTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACACTCTGCCATTACAAACTCAGCCCAACAGACAGATTCTTGATACTATCCTCGGATGGACTCTACCAGTACTTCACCAACGAAGAAGCTGTTTCTCAAGTAGAGTCCTTCATTGCTGCTTTTCCTGAAGGAGATCCTGCTCAACATCTAATTGAAGAAGTACTGTTCCGAGCAGCGAAAAAATACGGAATGGACTTCCATGAGCTGCTCGACATCCCACAAGGGGAGCGGCGGAAGTACCACGACGACGTTTCGGTAATCATCATTTCATTCGAAGGGAGAATCTGGCATTCATTGATGTAA 2148 46.97 MGNRIGKIGRCFAGDGDISRRYDPADIIVDPHDGGFGHSFYYLPPDPHTISSSKDFSDEYISPATTIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRHSVSGNSGGFPYSGPIERGFLSGPLASRNESGPIDRGVCSGPIEKSAVGPEKLRRSFSHSGVGDRQPKSKRRSLIRILKKAISKTISRNQKAVSSRVRESESYKHNENAAATQTQSSVHLSSHASLAPEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYAAVLKELKGLIWNDKFDSTATSSSMNSSNSASIEEEDGLTHLKNHQSTENFPAGNKMVNLEAESMRKRERVYNTNYRTSQLMKRADQNPKTWKCEWERERLEFDGKMNNKQLDHHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQLEPDFGFGKQYRDLERINEGTLRVFESSNGVEFERLTTLASHQLTMDHSTYTEEEVQRIKKAHPNDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVSQVESFIAAFPEGDPAQHLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVIIISFEGRIWHSLM 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5258432 5261247 - CmoCh07G010390.1 Cmo07g01039 386347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01039 715 Pfam Protein phosphatase 2C 420 677 IPR001932 -
Cmo07g01039 715 CDD PP2Cc 409 706 IPR001932 -
Cmo07g01039 715 SUPERFAMILY PP2C-like 266 707 IPR036457 -
Cmo07g01039 715 SMART PP2C_4 244 704 IPR001932 -
Cmo07g01039 715 MobiDBLite consensus disorder prediction 151 191 - -
Cmo07g01039 715 Gene3D - 221 711 IPR036457 -
Cmo07g01039 715 MobiDBLite consensus disorder prediction 209 243 - -
Cmo07g01039 715 PANTHER PROTEIN PHOSPHATASE 2C 21 713 IPR015655 GO:0004722|GO:0006470
Cmo07g01039 715 ProSiteProfiles PPM-type phosphatase domain profile. 255 706 IPR001932 -
Cmo07g01039 715 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 21 713 - -
Cmo07g01039 715 MobiDBLite consensus disorder prediction 226 243 - -
Cmo07g01039 715 MobiDBLite consensus disorder prediction 168 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00439 Cmo07g01039 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00439 Cmo-Chr3:4997810 Cmo07g01039 Cmo-Chr7:5258432 0 dispersed
Cmo07g01039 Cmo-Chr7:5258432 Cmo16g01120 Cmo-Chr16:7922076 4.94E-42 dispersed
Cmo02g00805 Cmo-Chr2:4953061 Cmo07g01039 Cmo-Chr7:5258432 0 wgd
Cmo20g00446 Cmo-Chr20:2072912 Cmo07g01039 Cmo-Chr7:5258432 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01039 - - bhj:120069881 1264.98