Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01042 ATGCCTTCTCTCTCTCTCCTCTGCATTTTTGCTTCTCTCTCCTCTCTCTTCCTCCTCTCCCACGCCAGAATCCCCGGCGTCTACTCCGGCGGCCCCTGGCTGGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACCATGGGCGGCGCGTGTGGGTATGGGAATCTCTACAGTCAGGGCTACGGCGTCAACACGGCGGCGCTGAGTACGGCTCTGTTCAATAATGGCTTTAGCTGCGGCGCTTGCTTTGAGATCAAGTGCGTTAATGATCCCCAATGGTGCCATTCCGGTAGCCCTTCTATTTTCATTACCGCTACCAATTTCTGTCCCCCTAATTTTGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCCCGCACTCATTTTGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACCGTGCCGGAATCGTCCCCGTCGCTTACCGCCGGGTGGCATGTAGAAAACAAGGCGGAATCCGGTTCACAATTAACGGTTTCCGTTACTTCAACTTGGTTTTAATCACGAACGTCGCGGGTGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGATCGAATACGGGTTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAACGCTATTTTGGTGGGCCAGAGTCTTTCCTTCCGGGTCACGGGCAGTGACCGTCGTACCTCAACATCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCACGTCTGA 780 54.87 MPSLSLLCIFASLSSLFLLSHARIPGVYSGGPWLDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCVNDPQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSNAILVGQSLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFHV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5279087 5280652 - CmoCh07G010420.1 Cmo07g01042 386350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01042 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cmo07g01042 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cmo07g01042 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cmo07g01042 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Cmo07g01042 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cmo07g01042 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cmo07g01042 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cmo07g01042 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cmo07g01042 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cmo07g01042 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cmo07g01042 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cmo07g01042 259 PANTHER EXPANSIN 3 258 - -
Cmo07g01042 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cmo07g01042 259 Gene3D - 165 257 IPR036749 -
Cmo07g01042 259 PANTHER EXPANSIN-A15 3 258 IPR002963 GO:0009664
Cmo07g01042 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cmo07g01042 259 Gene3D - 21 161 IPR036908 -
Cmo07g01042 259 SMART dpbb_1 68 155 IPR007112 -
Cmo07g01042 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00435 Cmo07g01042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01042 Cmo-Chr7:5279087 Cmo04g01748 Cmo-Chr4:8826880 3.09E-124 dispersed
Cmo01g00634 Cmo-Chr1:3246744 Cmo07g01042 Cmo-Chr7:5279087 1.70E-165 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo07g01042 Cmo-Chr7:5279087 3.98E-150 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo07g01042 Cmo-Chr7:5279087 1.76E-165 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo07g01042 Cmo-Chr7:5279087 6.78E-165 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo07g01042 Cmo-Chr7:5279087 1.24E-168 wgd
Cmo04g02778 Cmo-Chr4:20041108 Cmo07g01042 Cmo-Chr7:5279087 6.76E-136 wgd
Cmo04g00211 Cmo-Chr4:1056541 Cmo07g01042 Cmo-Chr7:5279087 3.08E-91 wgd
Cmo04g01251 Cmo-Chr4:6347642 Cmo07g01042 Cmo-Chr7:5279087 8.36E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01042 - - csv:101212872 504.597