Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01055 ATGGAAACCAATCTTCCCCTTCTCTTTCTTCTCATTTTACTCTCAATCTTCCTCTCCTGCTCCGCCAAGCGCTGCCCGGACTGCGGCCGCACGCCGGTGCCGTACCCACTCAGCACACGCCCAGATTGCGGTGACCCTCTTTACAGAGTTCGGTGCACCGCCGGCGTGCTCTGGTTCGAGTCCGTCAATGGGTCTTCCTATTTGATCACTTCCGTTAATCCGGTGGCCCAGAGGTTGATTATCCGGCCGCCGGGGTTGGCGAAAAACGCCTGCGTTTCATCGGATTTTGGGAGCCATGGATTTTGGCTCGACACTGGCCACCCTTTCACCATTACCAATAGAAACACGGTTCTACTCTTCAATTGTTCGATGGAAGTCCTGGAAAATAGTTGGAACTGTTCGGCTAACAGCGTCTGTCATGACTACATCAAGCAGAATCCGGTGGTCATGGGGGCGTGTAAGGCGGCGCCGACGTGCTGTTGGTATACAAGTGGAGGGTCCATTACTGAGTACAGAATCAGGGTGCGGAAGGAGCGGTGTTCGGCTTATGAATGTTTTGTGAATTTGGGTGGTTCTGTTCCGGCGAAGAAGAAGTGGCCAGAATCTGGGGTGGAGATTCAATGGGCACCTCCGCGAGAGCCGCCGTGTCGAGTGGCTGCAGACTGCCGGAATTGGGAGAATTCTGCTTGTTTGCCGGAACCTGCAAATGCTCGCCAGAGGAGGTGCTTCTGCAAGGTGCCTTTCAAGTGGGATCCTGTTAATGGCTTATGCAATGGCAACAATGTGAAAATACAGAACAAGAGAATTCACAAGAAGCATAAGAAGATGCCTGCTATTCTTGGAGCAATGGCTGGAGTGATCGTCGTGGTGATTGGTGGCTCGACCATGTTTATAATTTTCAAAAGACGTCAACAGATTCCCAAAGGGAACGAACTCAGTTCGAAACAAGTTCGTGAAGTGATTCTAACAGCCAACAGCAGTGGCAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCGAAAGAGAACTTGCTTGGCTCTGGTGGCTATGGAGAGGTTTTCAAAGGCAGCTTAGAAGATGGAACCTTAGTAGCTGTTAAGCGCGCCAAGTTGGGGTGCATGAAGGGTATCGATCAAATCCTGAACGAAGTTCGAATTCTTTGTCAGGTGAACCATCGATGCCTTGTTCGTCTACTTGGATGTTGCCTCGAACTCGAGCAACCCCTGCTAATATATGAGTATATCTCAAATGGGAACCTATTTGATCACCTTCATGGTAATACAAGTTCAAGTAAATGGCCACCGTTGACATTGAGTCGTCGACTCTACATTGCTCGCCAAACGGCTGATGGCCTTGCCTATCTACACACTTCAGCCATGCCAAGAATCTATCACCGAGATATAAAGTCGAGCAATATTCTGCTAGATGAGAAGTTGAATGCTAAAGTTGCCGATTTCGGGCTTTCTAGACTGGCTGTTACAGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTAGACCCGGAATATTACTTAAACTTTCAATTGACAGACAAGAGCGATGTTTATAGTTTTGGAGTTGTCATGCTCGAGCTGTTGACTTCTGAGAAAGCCATTGATTTTAACAGAGAAGAGGAAGATGTAAACTTAGTAGTTTATATCAAGAAGATTATCAAAGAAGACAGATTGATGGAAGTTGTTGATCCTGTGATCAAACAGAGAGCAAGCAGAGTTCAAATAGAGATAATGAAGGCATTAGGGTCTCTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAAAACAGACCTACAATGAAAGAAGTTGCTGATGAGCTAGCCAACATTATTTGTGTTCTTAACAGAGAGATTCCAAATATTGACGAACTGTAA 1920 46.88 METNLPLLFLLILLSIFLSCSAKRCPDCGRTPVPYPLSTRPDCGDPLYRVRCTAGVLWFESVNGSSYLITSVNPVAQRLIIRPPGLAKNACVSSDFGSHGFWLDTGHPFTITNRNTVLLFNCSMEVLENSWNCSANSVCHDYIKQNPVVMGACKAAPTCCWYTSGGSITEYRIRVRKERCSAYECFVNLGGSVPAKKKWPESGVEIQWAPPREPPCRVAADCRNWENSACLPEPANARQRRCFCKVPFKWDPVNGLCNGNNVKIQNKRIHKKHKKMPAILGAMAGVIVVVIGGSTMFIIFKRRQQIPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGSLEDGTLVAVKRAKLGCMKGIDQILNEVRILCQVNHRCLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLYIARQTADGLAYLHTSAMPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAVTESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIKEDRLMEVVDPVIKQRASRVQIEIMKALGSLAAACLDEKRQNRPTMKEVADELANIICVLNREIPNIDEL 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5370828 5372935 + CmoCh07G010550.1 Cmo07g01055 386363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01055 639 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cmo07g01055 639 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Cmo07g01055 639 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01055 639 SUPERFAMILY Protein kinase-like (PK-like) 329 622 IPR011009 -
Cmo07g01055 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cmo07g01055 639 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Cmo07g01055 639 Pfam Protein tyrosine and serine/threonine kinase 349 622 IPR001245 GO:0004672|GO:0006468
Cmo07g01055 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 628 IPR045274 GO:0007166
Cmo07g01055 639 SMART serkin_6 346 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01055 639 CDD STKc_IRAK 352 625 - -
Cmo07g01055 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 24 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00422 Cmo-Chr6:2031132 Cmo07g01055 Cmo-Chr7:5370828 0 dispersed
Cmo07g01055 Cmo-Chr7:5370828 Cmo04g02514 Cmo-Chr4:18516963 7.15E-95 dispersed
Cmo15g00115 Cmo-Chr15:551544 Cmo07g01055 Cmo-Chr7:5370828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74485 PF07714 PK_Tyr_Ser-Thr 3.50E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01055 - - csv:101204219 1117.45