Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g01064 | ATGGCGGAGGAGGGTTTTGAAGTGTACCATGTCCCACACCAGAGCTGCAGAGATAAGCTTCGTGTGGGAATTGCAAACAATAATCATAATTCCCACATCGCCGCTGCTTTGCTTCCTTTATGTCATCCTCCTTCTTTGATCTCCTCCCACTTTGATTCCCACCCACTTCCTCAAAATCCCTCTTTTCATTACCCTCCTCCTCCACCTCCTCCTCCCACCGCCGCCGATGTCCCCCCGCTCCTCCCTGACCAACCCTTGTCCCTTGACCTCAACCTCCAGCAGCGCTACGCCTCCGCCCTCCCTTTTGTTGGCTACTCCGCCTCCCTTTTGAAAGCCTCCAAATTCTTGAAGCCCGCTCAGCAGCTGCTTCACGACCTGTTTGACTCGCCGCCGGATCCCCTCCTCCTTGACCCTCTTCTTGAAAGCTTGGCCGGTGATATTCCTGATCCGATTACCTCTACCGACGACGACGGCGGCGCCGACAGCCGGAGGAAAAAATCCAGGCTTGTTACCATGCTGGACGAGGTATACAAAAGATATAAGCTTTACTATCAACAGATGCAAGCTGTGGTTACAACATTTGAATACGCTGCAGGGCTTGGCAATGCAGCGCCCTACATGAACTTGGCCGTAACAGCCATGTTTAAGCATTTCAAATTCTTAAAGAACACCATTGCCGACCAGCTCCAATTCAACAAGAAAAATCAGCAGCCTTACAACCCATATTGCCAAACATCCATTCACAACAACAATAATGCACCATTCGTCGACCACCAACCCGTTTGGCGACCTCAGAGAGGCCTCCCGGAGAGCGCTGTCACTGTCCTCCGAGCGTGGCTCTTCGAACACTTCCTTCATCCCTATCCTACTGACACGGATAAGCTCATGCTGGCTAGCCAAACTGGTCTCTCGCGAAGCCAGGTATCAAACTGGTTTATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGCAAGCTCGAAAATCTCATCAGAACAACGACGACAACGACAACAACAATGATCATATTTCAACCCACAATGGCAATAATAACAATGCATCTTCATCACATCACGATCACAACCAACTGAACTTGTCCAACTCCAATTTCATTCCGACCCACCACCCTCATGTGGCTGCAGGAGCCGCCCATATGGGTGGGGGCGCGGGCGGCGGAAACGTTTCCTTAACTCTGGGGCTTCACCAGAATTACGGCGGGATTACTCTCACGGAACCGTTTCCGATCAATGCAGCTCAGCATTTTAACTTTGGGTTAGAAGGCAATGGTGAAGGGTTTGTAAATGAGTGGTTTTAA | 1341 | 50.34 | MAEEGFEVYHVPHQSCRDKLRVGIANNNHNSHIAAALLPLCHPPSLISSHFDSHPLPQNPSFHYPPPPPPPPTAADVPPLLPDQPLSLDLNLQQRYASALPFVGYSASLLKASKFLKPAQQLLHDLFDSPPDPLLLDPLLESLAGDIPDPITSTDDDGGADSRRKKSRLVTMLDEVYKRYKLYYQQMQAVVTTFEYAAGLGNAAPYMNLAVTAMFKHFKFLKNTIADQLQFNKKNQQPYNPYCQTSIHNNNNAPFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLASQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQARKSHQNNDDNDNNNDHISTHNGNNNNASSSHHDHNQLNLSNSNFIPTHHPHVAAGAAHMGGGAGGGNVSLTLGLHQNYGGITLTEPFPINAAQHFNFGLEGNGEGFVNEWF | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5426177 | 5428825 | - | CmoCh07G010640.1 | Cmo07g01064 | 386372 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g01064 | 446 | Pfam | Homeobox KN domain | 279 | 318 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo07g01064 | 446 | SMART | HOX_1 | 262 | 326 | IPR001356 | GO:0003677 | |
Cmo07g01064 | 446 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
Cmo07g01064 | 446 | SUPERFAMILY | Homeodomain-like | 264 | 329 | IPR009057 | - | |
Cmo07g01064 | 446 | CDD | homeodomain | 262 | 323 | IPR001356 | GO:0003677 | |
Cmo07g01064 | 446 | Gene3D | - | 265 | 327 | - | - | |
Cmo07g01064 | 446 | MobiDBLite | consensus disorder prediction | 334 | 350 | - | - | |
Cmo07g01064 | 446 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 84 | 424 | - | - | |
Cmo07g01064 | 446 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 84 | 424 | - | - | |
Cmo07g01064 | 446 | MobiDBLite | consensus disorder prediction | 57 | 82 | - | - | |
Cmo07g01064 | 446 | Pfam | Associated with HOX | 160 | 226 | IPR006563 | - | |
Cmo07g01064 | 446 | ProSiteProfiles | 'Homeobox' domain profile. | 259 | 322 | IPR001356 | GO:0003677 | |
Cmo07g01064 | 446 | MobiDBLite | consensus disorder prediction | 351 | 382 | - | - | |
Cmo07g01064 | 446 | MobiDBLite | consensus disorder prediction | 334 | 393 | - | - | |
Cmo07g01064 | 446 | SMART | prehox3 | 103 | 227 | IPR006563 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo07g01064 | Cmo14g00104 | CCT | |
Cmo06g00271 | Cmo07g01064 | CCT | |
Cmo07g01064 | Cmo14g00104 | ECH | |
Cmo06g00271 | Cmo07g01064 | ECH | |
Cmo03g00411 | Cmo07g01064 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g01064 | Cmo-Chr7:5426177 | Cmo13g00245 | Cmo-Chr13:2012539 | 1.88E-75 | dispersed | |
Cmo14g00104 | Cmo-Chr14:480107 | Cmo07g01064 | Cmo-Chr7:5426177 | 3.38E-07 | wgd | |
Cmo03g00411 | Cmo-Chr3:4872357 | Cmo07g01064 | Cmo-Chr7:5426177 | 0 | wgd | |
Cmo06g00271 | Cmo-Chr6:1371446 | Cmo07g01064 | Cmo-Chr7:5426177 | 2.24E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10169 | PF07526 | POX | 2.10E-24 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g01064 | - | - | cmos:111453568 | 495.738 |