Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01064 ATGGCGGAGGAGGGTTTTGAAGTGTACCATGTCCCACACCAGAGCTGCAGAGATAAGCTTCGTGTGGGAATTGCAAACAATAATCATAATTCCCACATCGCCGCTGCTTTGCTTCCTTTATGTCATCCTCCTTCTTTGATCTCCTCCCACTTTGATTCCCACCCACTTCCTCAAAATCCCTCTTTTCATTACCCTCCTCCTCCACCTCCTCCTCCCACCGCCGCCGATGTCCCCCCGCTCCTCCCTGACCAACCCTTGTCCCTTGACCTCAACCTCCAGCAGCGCTACGCCTCCGCCCTCCCTTTTGTTGGCTACTCCGCCTCCCTTTTGAAAGCCTCCAAATTCTTGAAGCCCGCTCAGCAGCTGCTTCACGACCTGTTTGACTCGCCGCCGGATCCCCTCCTCCTTGACCCTCTTCTTGAAAGCTTGGCCGGTGATATTCCTGATCCGATTACCTCTACCGACGACGACGGCGGCGCCGACAGCCGGAGGAAAAAATCCAGGCTTGTTACCATGCTGGACGAGGTATACAAAAGATATAAGCTTTACTATCAACAGATGCAAGCTGTGGTTACAACATTTGAATACGCTGCAGGGCTTGGCAATGCAGCGCCCTACATGAACTTGGCCGTAACAGCCATGTTTAAGCATTTCAAATTCTTAAAGAACACCATTGCCGACCAGCTCCAATTCAACAAGAAAAATCAGCAGCCTTACAACCCATATTGCCAAACATCCATTCACAACAACAATAATGCACCATTCGTCGACCACCAACCCGTTTGGCGACCTCAGAGAGGCCTCCCGGAGAGCGCTGTCACTGTCCTCCGAGCGTGGCTCTTCGAACACTTCCTTCATCCCTATCCTACTGACACGGATAAGCTCATGCTGGCTAGCCAAACTGGTCTCTCGCGAAGCCAGGTATCAAACTGGTTTATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGCAAGCTCGAAAATCTCATCAGAACAACGACGACAACGACAACAACAATGATCATATTTCAACCCACAATGGCAATAATAACAATGCATCTTCATCACATCACGATCACAACCAACTGAACTTGTCCAACTCCAATTTCATTCCGACCCACCACCCTCATGTGGCTGCAGGAGCCGCCCATATGGGTGGGGGCGCGGGCGGCGGAAACGTTTCCTTAACTCTGGGGCTTCACCAGAATTACGGCGGGATTACTCTCACGGAACCGTTTCCGATCAATGCAGCTCAGCATTTTAACTTTGGGTTAGAAGGCAATGGTGAAGGGTTTGTAAATGAGTGGTTTTAA 1341 50.34 MAEEGFEVYHVPHQSCRDKLRVGIANNNHNSHIAAALLPLCHPPSLISSHFDSHPLPQNPSFHYPPPPPPPPTAADVPPLLPDQPLSLDLNLQQRYASALPFVGYSASLLKASKFLKPAQQLLHDLFDSPPDPLLLDPLLESLAGDIPDPITSTDDDGGADSRRKKSRLVTMLDEVYKRYKLYYQQMQAVVTTFEYAAGLGNAAPYMNLAVTAMFKHFKFLKNTIADQLQFNKKNQQPYNPYCQTSIHNNNNAPFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLASQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQARKSHQNNDDNDNNNDHISTHNGNNNNASSSHHDHNQLNLSNSNFIPTHHPHVAAGAAHMGGGAGGGNVSLTLGLHQNYGGITLTEPFPINAAQHFNFGLEGNGEGFVNEWF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5426177 5428825 - CmoCh07G010640.1 Cmo07g01064 386372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01064 446 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Cmo07g01064 446 SMART HOX_1 262 326 IPR001356 GO:0003677
Cmo07g01064 446 MobiDBLite consensus disorder prediction 59 79 - -
Cmo07g01064 446 SUPERFAMILY Homeodomain-like 264 329 IPR009057 -
Cmo07g01064 446 CDD homeodomain 262 323 IPR001356 GO:0003677
Cmo07g01064 446 Gene3D - 265 327 - -
Cmo07g01064 446 MobiDBLite consensus disorder prediction 334 350 - -
Cmo07g01064 446 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 424 - -
Cmo07g01064 446 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 84 424 - -
Cmo07g01064 446 MobiDBLite consensus disorder prediction 57 82 - -
Cmo07g01064 446 Pfam Associated with HOX 160 226 IPR006563 -
Cmo07g01064 446 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Cmo07g01064 446 MobiDBLite consensus disorder prediction 351 382 - -
Cmo07g01064 446 MobiDBLite consensus disorder prediction 334 393 - -
Cmo07g01064 446 SMART prehox3 103 227 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g01064 Cmo14g00104 CCT
Cmo06g00271 Cmo07g01064 CCT
Cmo07g01064 Cmo14g00104 ECH
Cmo06g00271 Cmo07g01064 ECH
Cmo03g00411 Cmo07g01064 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01064 Cmo-Chr7:5426177 Cmo13g00245 Cmo-Chr13:2012539 1.88E-75 dispersed
Cmo14g00104 Cmo-Chr14:480107 Cmo07g01064 Cmo-Chr7:5426177 3.38E-07 wgd
Cmo03g00411 Cmo-Chr3:4872357 Cmo07g01064 Cmo-Chr7:5426177 0 wgd
Cmo06g00271 Cmo-Chr6:1371446 Cmo07g01064 Cmo-Chr7:5426177 2.24E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10169 PF07526 POX 2.10E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01064 - - cmos:111453568 495.738