Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01079 ATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGCCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACACTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTTCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTCCTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAA 492 47.76 MAALETAGVDLEEGGRGGDGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHELNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 5607475 5608772 - CmoCh07G010790.1 Cmo07g01079 386387
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01079 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Cmo07g01079 163 SUPERFAMILY RING/U-box 33 92 - -
Cmo07g01079 163 MobiDBLite consensus disorder prediction 1 27 - -
Cmo07g01079 163 SMART ringv_2 36 89 IPR011016 GO:0008270
Cmo07g01079 163 PANTHER ZINC FINGER, RING-CH-TYPE 28 162 - -
Cmo07g01079 163 Pfam RING-variant domain 37 88 IPR011016 GO:0008270
Cmo07g01079 163 CDD RING_CH-C4HC3_MARCH 37 89 - -
Cmo07g01079 163 ProSiteProfiles Zinc finger RING-CH-type profile. 29 95 IPR011016 GO:0008270
Cmo07g01079 163 PANTHER OS01G0850200 PROTEIN 28 162 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01079 Cmo-Chr7:5607475 Cmo07g00172 Cmo-Chr7:909618 1.20E-21 dispersed
Cmo07g01303 Cmo-Chr7:7258932 Cmo07g01079 Cmo-Chr7:5607475 2.14E-09 transposed
Cmo13g00088 Cmo-Chr13:532189 Cmo07g01079 Cmo-Chr7:5607475 2.30E-37 wgd
Cmo14g00095 Cmo-Chr14:448197 Cmo07g01079 Cmo-Chr7:5607475 3.98E-50 wgd
Cmo15g00126 Cmo-Chr15:602427 Cmo07g01079 Cmo-Chr7:5607475 8.22E-55 wgd
Cmo04g03049 Cmo-Chr4:21346815 Cmo07g01079 Cmo-Chr7:5607475 2.00E-56 wgd
Cmo06g00261 Cmo-Chr6:1331216 Cmo07g01079 Cmo-Chr7:5607475 1.95E-62 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01079 - - mcha:111019441 221.861