Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g01079 | ATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGCCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACACTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTTCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTCCTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAA | 492 | 47.76 | MAALETAGVDLEEGGRGGDGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHELNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5607475 | 5608772 | - | CmoCh07G010790.1 | Cmo07g01079 | 386387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g01079 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 96 | IPR013083 | - | |
| Cmo07g01079 | 163 | SUPERFAMILY | RING/U-box | 33 | 92 | - | - | |
| Cmo07g01079 | 163 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cmo07g01079 | 163 | SMART | ringv_2 | 36 | 89 | IPR011016 | GO:0008270 | |
| Cmo07g01079 | 163 | PANTHER | ZINC FINGER, RING-CH-TYPE | 28 | 162 | - | - | |
| Cmo07g01079 | 163 | Pfam | RING-variant domain | 37 | 88 | IPR011016 | GO:0008270 | |
| Cmo07g01079 | 163 | CDD | RING_CH-C4HC3_MARCH | 37 | 89 | - | - | |
| Cmo07g01079 | 163 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 29 | 95 | IPR011016 | GO:0008270 | |
| Cmo07g01079 | 163 | PANTHER | OS01G0850200 PROTEIN | 28 | 162 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo07g01079 | Cmo14g00095 | CCT | |
| Cmo06g00261 | Cmo07g01079 | CCT | |
| Cmo07g01079 | Cmo14g00095 | ECH | |
| Cmo06g00261 | Cmo07g01079 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g01079 | Cmo-Chr7:5607475 | Cmo07g00172 | Cmo-Chr7:909618 | 1.20E-21 | dispersed | |
| Cmo07g01303 | Cmo-Chr7:7258932 | Cmo07g01079 | Cmo-Chr7:5607475 | 2.14E-09 | transposed | |
| Cmo13g00088 | Cmo-Chr13:532189 | Cmo07g01079 | Cmo-Chr7:5607475 | 2.30E-37 | wgd | |
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo07g01079 | Cmo-Chr7:5607475 | 3.98E-50 | wgd | |
| Cmo15g00126 | Cmo-Chr15:602427 | Cmo07g01079 | Cmo-Chr7:5607475 | 8.22E-55 | wgd | |
| Cmo04g03049 | Cmo-Chr4:21346815 | Cmo07g01079 | Cmo-Chr7:5607475 | 2.00E-56 | wgd | |
| Cmo06g00261 | Cmo-Chr6:1331216 | Cmo07g01079 | Cmo-Chr7:5607475 | 1.95E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g01079 | - | - | mcha:111019441 | 221.861 |