Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g01089 | ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACACATAGAGTCCGGTGCCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGACGGTTGAAGAGAGATCGCTCTATTGAGAGACCGGTGCATGAATACCAGCAACCTGCACGGGATCAGTTTTACCCTGCTAAAAACCAAAAATATGATAGAAACAGGCTTCCCCCAGGTTGGTTGGATTGCCCTGCGTTTGGTCAAGAAATATGCTGCATGATTCCTTCCAAGGTTCCTCTGGGTGAATCCTTCAATGACTGTATAACACCTGGTAAAAGATACTCGTTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGGAAACTCGGTTTGGTGATTGATTTGACAAATTCTTACCGTTATTATACAACAACAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGAGATTCTGTACCTGACAACAAGTCAGTCAATATGTTTGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACATTCAAAGAAGTATATTCTTGTCCATTGCACTCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAACGTTTTCCGATGCACGGCCTCCTGGAATTTACAAGCCAGATTACATTGATGCATTATATGCCTTTTATCATGAAAAAAAACCTGAAATGGTTGTTTGCCCACCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGTGAAGCAGTTCCGGATGACGACGATGATGGGGGTTCTGCGGCTCCGTTGAATGAAAATCATGATGATGGTACTCAAATGATGACAAATGATGATATATTGGGAGATGAGATACCTGAGGACCAGGAACGTGCTTTAAAACACTTTTGCTATCAAATGCTTAAATTGAATGCTGGAGTGAGGAGGAAAGACTTTTGGTTGCTCTCTACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCACATGATGCCGATGGTCTAATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTGAAGTGGAAATATCCTGAAATGAACTCAGTCGACTTCCTATTTGAGGTTTTGGGTGAAGATGATTCTCAGATTCTTATTTTGTTCGAACGTGGAAAGAGGAAAACGATGGATGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTTGAGTGTTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTACAAAAAGGTCATGCGCAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAGGAGATTCACGAGATAATACGCTTGCCCATGTATGCTGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGGCTGGCGAGTTGTATGATCCAGTTATTGCACTTGATAGATGTGAGGGCGGACACATGAAATTCTCCGTGATTTTTCTTTTGATTTGTTTAATTCTCTTTGCTCGGTCGAAATGCGTTCACGGTGAAGAGGCCAAGGAAAACAAACTTCGGGAGCGAGAAGCCTCCGATGATGTCCTTGGATATCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACGGAAGTGAGTTCTAGCATATATGCCACGCCCTTGATCGCTGATGTTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTCTTGAAGGATCTGATGGAGATAAAATGCCAGGCTGGCCTGCTTTTCATCAATCAACTGTGCACGCTAGTCCTCTTCTATATGATATTGACAAAGATGGTATGAGGGAAATAGCTTTGGGAACATACAATGGAGAAGTACTCTTTTTCAGGGTGTCAGGATATATGATGCCAGACAAGTTAAAGATACCACGTCTCCGTGTGCGCAAGAATTGGTATGTGAATCTAAATTCAGTTCCAGTGGACCGGTTTCATCCAGATGTTCATGATGAACAACTTGTCATGGAAGCAAATAAGACAAAATCAATGGCTCTTACCAAATCAACACAAAAGCTGAATGATTCAGATTTGGTGAAGAATAGTAAGGTAAACGACAGCAATGTTGTACCAGATATTGTCCTACCTACAAGCATGACCAACAATACTTCTACGAATCGTACTGGAATACTTGATGGTAAGAAAGGAACTGGGATCAGTAGACGACTTCTGAAAGGTGGTGACTCCAAACAATCTCAAGAAGATGGTTCTAGGTCCAAGGAAGACGGTAGTGGAGATGCTCATGTTGCCACCGTTGAAAGTGAAGAAGCTTTGGAAGCAGAGGCTGATTCATCATTTGAGATATTCCGTGAAAATGATGAGCTGGCTGATGATTACAGTCAAGAAGATGATGATTATAACAATGGATCCACGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTAGAGGAGTATGTGGATATTGACGCACATTTGTTGTGCACTCCTGTCATAGCTGACATTGACAATGATGGAGTGTCTGAAATGATTGTAGCTGTTTCATACTTTTTTGATCATGAGAAATTGATGACCTTCTTTGATAATAGGTACTATGACAACCCAGAGCACATGAAAGAATTGGGCGATATTGATATTGGGAAATATGTAGCTGGTGCCATTGTTGTTTTCGATCTGGATTCGAAGCAAGTGAAGTGGATAACTGAACTAGACTTGAGCATAGATTCTGCAAAATTTCTTGCTTATATATATTCCTCCCCTACTGTCATTGATTTGGATGGTGATGGGAATTTGGATATTCTTGTTGGAACTTCTTTTGGCTTGTTCTACATCTTGGATCATCATGGCAAGGTGAGAGAAAACTTTCCTCTTCAAATGGCTGATATTACGGGAGCAGTTGTTGCAGCTGATATCAATGATGATGGAAAAATTGAACTTGTGGCTACGGATTCACATGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAAAGAATCTAAAAAGCCTCATACCACAGGGTCCATCCATTGGCGATGTCGATGGGGACGGCGATACTGATGTGGTGGTGCCAACAGTATCAGGAAATATATATGTTCTAAGTGGCAAGGACGGGTCATTTGTTCGTCCATACCCCTATAGAACCCATGGAAGAGTAACGAATCAAATTCTTCTCGTTGATCTGAACAAACGTGATGACAAAAAGAAGGGACTTACTTTAATCACATCATCATTTGATGGGTATCTATATCTCATTGATGGACCTACATCGTGTGCTGATGTTATCGACATCGGCGAGACTTCATATAGTATGGTTCTTGCTGATAATGTTGATGGTGGAGACGATCTTGATCTTATTGTCACAACCATGAATGGAAATGTTTTCTGCTTTTCAACCCCTTCTCCTCATCATCCACTCAAGACATGGAGATCAGCTAATCAAGGAAGAAACAATGTTGCAGTCCGGCACAACCGTGAAGGCATTTTCGTTTCGCATTCGTCTAGAACATACCGTGACGAGGAAGGCAAGAACTTCTGGATGGAGATCGAGATTGTAGACCGTTACAGAAACCCATCTGGGACTCAAGCACCATATAACGTTACCACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAGAGGAGGATAAAACAGAACCAGATGTTCAAAGAACCGGGCAAGCATCGGATTGAACTGCCGACAGTGAGTGCAAGGACCACAGCCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCAGATGAGTTCTCCCTCACATTCCATGTGTATTATTACAAGTTCCTGAAGTGGCTTCTTGTCCTCCCAATGCTTGCAATGTTTGATCGTTCGCTAAGCAACTCTTCTTCTCTTCTTTTTGATATGAAACCAAATCGCAAGCTCAAGAAAGCTGATTCATCTTCGAAGCTTGTATTGGAGGAAATTATCGGTACCACAACAAAGAACAACAATGGATTGGCTTCCAATGTAAATTCTCCGAACTGCGTCTATTTGACCGGATGCGTTGTGGTGGTTCATAATGTTCACTCTGGTACGCAATCGCACCTCGTGGTGCCTCATCGGTTGTGCAAACCTCTGAGCTGTGTTGCAATGTCTCTGGATGGCCGCTTTGTTGCTGCTGGAGAGTCAGGGCCTCAACCCGCAGTATTTGTGTGGGACTTAGCTGGCATGGCCTTTCTATCAGAGCTGAAAGGTCATCTGTATGGTGTTGCTTGTCTTGCCTTTTCACCTGATGATTCAAAATCCATTTTAACCGCTGGGAAGAAGCACTTGAAGTTCTGGACAATTACATCCCCTAAGACCCAGTTTAATTTAGGGACAAGTTCATTGTCTTTGCATGGAAAACCTGTTAATCTTGGTGCCCATCAAGGAAGCTCATTTGTTTCTATCACCTCTGGCTTGTCGACCGACGGTAGCTCAGGTGAAGTCTTTCCCATGTATGCATTGACTGAATCAGGTGTCCTTTGCCTCGTGAACTCAGGATTTTCAGTTACGAAGTCCGTCGATAAATGTTTCGCTGTATCTGCATCTAGCAAGTTAGTTGCTTGTGCCTGCAGCAATGGAATAGTACGACTTTATGATGCTGAGAGTCTCCAATATGGAGGAAGTTTCACCTATTCAAGATCCAAGCAATTCGACGGGGAAAGCAATATGGTTCATCTCATGAAAGATGATGGAAATGATCTTCGAAGCTTACCTGTTCTTCCTGATGCGGTTGCATGTTTTTTTTCAACCTCAGAAAAGCTTGTGGTTATTTATGGAGATCACAATCTTAACATATGGGATATCCACGACGTGAAGCAGGTGACCAGGTCTTGTGTGCTAGTTTCACATTCTGCTTGCATATGGGATATCAAGGTTCTTTGTTGTGAGAACATGCACGATCCATCTCTTGCTTGTGCTGCTAGAGGTTGTTCAGGAGGAATGTCTTTTGCAACATGCTCAGCAGATGGTACTATTAGGTTGTGGGATCTAGCTTTGGAACCTGATTCAGAAGATGCAATGGACAAGCAAGTACGACAAGAGACCACTACACGCTTAGAAAGTGCTGGGATATTTGATCGAGAAACTGTGGAGGCTGGTTTGAACTCTCGAGACTTTCGTTCTCTGGCAGCGAGTTCAGATGGAAAATACCTTGCCGCTGGTGATTGTGATGGAAACATTCACATATTTAACCTGCTTACTTCTGATTATACATGTCTTCAGGCGAGCCATTGGAACTAG | 5466 | 42.65 | MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIESGASIARREREERKRRLKRDRSIERPVHEYQQPARDQFYPAKNQKYDRNRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTTDLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKTFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGSAAPLNENHDDGTQMMTNDDILGDEIPEDQERALKHFCYQMLKLNAGVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVLGEDDSQILILFERGKRKTMDGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRRAGELYDPVIALDRCEGGHMKFSVIFLLICLILFARSKCVHGEEAKENKLREREASDDVLGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADVNSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGMREIALGTYNGEVLFFRVSGYMMPDKLKIPRLRVRKNWYVNLNSVPVDRFHPDVHDEQLVMEANKTKSMALTKSTQKLNDSDLVKNSKVNDSNVVPDIVLPTSMTNNTSTNRTGILDGKKGTGISRRLLKGGDSKQSQEDGSRSKEDGSGDAHVATVESEEALEAEADSSFEIFRENDELADDYSQEDDDYNNGSTWGDEEWTEVKHEKVEEYVDIDAHLLCTPVIADIDNDGVSEMIVAVSYFFDHEKLMTFFDNRYYDNPEHMKELGDIDIGKYVAGAIVVFDLDSKQVKWITELDLSIDSAKFLAYIYSSPTVIDLDGDGNLDILVGTSFGLFYILDHHGKVRENFPLQMADITGAVVAADINDDGKIELVATDSHGNVAAWTAQGQEIWEKNLKSLIPQGPSIGDVDGDGDTDVVVPTVSGNIYVLSGKDGSFVRPYPYRTHGRVTNQILLVDLNKRDDKKKGLTLITSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKTWRSANQGRNNVAVRHNREGIFVSHSSRTYRDEEGKNFWMEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERRIKQNQMFKEPGKHRIELPTVSARTTATVLVEMVDKNGLYFSDEFSLTFHVYYYKFLKWLLVLPMLAMFDRSLSNSSSLLFDMKPNRKLKKADSSSKLVLEEIIGTTTKNNNGLASNVNSPNCVYLTGCVVVVHNVHSGTQSHLVVPHRLCKPLSCVAMSLDGRFVAAGESGPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDDSKSILTAGKKHLKFWTITSPKTQFNLGTSSLSLHGKPVNLGAHQGSSFVSITSGLSTDGSSGEVFPMYALTESGVLCLVNSGFSVTKSVDKCFAVSASSKLVACACSNGIVRLYDAESLQYGGSFTYSRSKQFDGESNMVHLMKDDGNDLRSLPVLPDAVACFFSTSEKLVVIYGDHNLNIWDIHDVKQVTRSCVLVSHSACIWDIKVLCCENMHDPSLACAARGCSGGMSFATCSADGTIRLWDLALEPDSEDAMDKQVRQETTTRLESAGIFDRETVEAGLNSRDFRSLAASSDGKYLAAGDCDGNIHIFNLLTSDYTCLQASHWN | 1821 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5664956 | 5692722 | + | CmoCh07G010890.1 | Cmo07g01089 | 386397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g01089 | 1821 | CDD | RNA_5'-triphosphatase | 89 | 255 | - | - | |
Cmo07g01089 | 1821 | Pfam | WD domain, G-beta repeat | 1474 | 1508 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | Pfam | WD domain, G-beta repeat | 1691 | 1738 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | Pfam | mRNA capping enzyme, catalytic domain | 316 | 393 | IPR001339 | GO:0004484|GO:0005524|GO:0006370 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1682 | 1738 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1639 | 1676 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1111 | 1158 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1575 | 1608 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1424 | 1467 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1769 | 1806 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | SMART | WD40_4 | 1470 | 1509 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 807 | 835 | - | - | |
Cmo07g01089 | 1821 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 183 | 252 | IPR000387 | GO:0016311|GO:0016791 | |
Cmo07g01089 | 1821 | PANTHER | PROTEIN DEFECTIVE IN EXINE FORMATION 1 | 784 | 1356 | - | - | |
Cmo07g01089 | 1821 | PANTHER | PROTEIN DEFECTIVE IN EXINE FORMATION 1 | 548 | 769 | - | - | |
Cmo07g01089 | 1821 | Pfam | FG-GAP-like repeat | 1039 | 1095 | IPR013517 | - | |
Cmo07g01089 | 1821 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 205 | 215 | IPR016130 | GO:0016311|GO:0016791 | |
Cmo07g01089 | 1821 | Gene3D | - | 1560 | 1820 | IPR015943 | GO:0005515 | |
Cmo07g01089 | 1821 | Gene3D | Protein tyrosine phosphatase superfamily | 82 | 294 | IPR029021 | - | |
Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 278 | 315 | - | - | |
Cmo07g01089 | 1821 | Gene3D | - | 334 | 413 | - | - | |
Cmo07g01089 | 1821 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 86 | 275 | IPR029021 | - | |
Cmo07g01089 | 1821 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1477 | 1518 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | Gene3D | - | 1391 | 1498 | IPR015943 | GO:0005515 | |
Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 775 | 791 | - | - | |
Cmo07g01089 | 1821 | SUPERFAMILY | Integrin alpha N-terminal domain | 595 | 1134 | IPR028994 | - | |
Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 775 | 845 | - | - | |
Cmo07g01089 | 1821 | SUPERFAMILY | Nucleic acid-binding proteins | 396 | 509 | IPR012340 | - | |
Cmo07g01089 | 1821 | Gene3D | - | 425 | 501 | IPR012340 | - | |
Cmo07g01089 | 1821 | PANTHER | - | 784 | 1356 | IPR045232 | - | |
Cmo07g01089 | 1821 | PANTHER | - | 548 | 769 | IPR045232 | - | |
Cmo07g01089 | 1821 | Pfam | mRNA capping enzyme, C-terminal domain | 398 | 492 | IPR013846 | - | |
Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 22 | 60 | - | - | |
Cmo07g01089 | 1821 | SMART | dsp_5 | 120 | 260 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo07g01089 | 1821 | Gene3D | - | 930 | 1209 | IPR015943 | GO:0005515 | |
Cmo07g01089 | 1821 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1725 | 1739 | IPR001680 | GO:0005515 | |
Cmo07g01089 | 1821 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 113 | 264 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo07g01089 | 1821 | SUPERFAMILY | WD40 repeat-like | 1432 | 1808 | IPR036322 | GO:0005515 | |
Cmo07g01089 | 1821 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 279 | 394 | - | - | |
Cmo07g01089 | 1821 | Pfam | Dual specificity phosphatase, catalytic domain | 138 | 258 | IPR000340 | GO:0008138|GO:0016311 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00383 | Cmo07g01089 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00383 | Cmo-Chr3:4733130 | Cmo07g01089 | Cmo-Chr7:5664956 | 0 | transposed | |
Cmo03g00384 | Cmo-Chr3:4741476 | Cmo07g01089 | Cmo-Chr7:5664956 | 1.09E-111 | transposed | |
Cmo03g00382 | Cmo-Chr3:4722548 | Cmo07g01089 | Cmo-Chr7:5664956 | 5.69E-13 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g01089 | - | - | cpep:111781072 | 1517.29 |