Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01089 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACACATAGAGTCCGGTGCCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGACGGTTGAAGAGAGATCGCTCTATTGAGAGACCGGTGCATGAATACCAGCAACCTGCACGGGATCAGTTTTACCCTGCTAAAAACCAAAAATATGATAGAAACAGGCTTCCCCCAGGTTGGTTGGATTGCCCTGCGTTTGGTCAAGAAATATGCTGCATGATTCCTTCCAAGGTTCCTCTGGGTGAATCCTTCAATGACTGTATAACACCTGGTAAAAGATACTCGTTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGGAAACTCGGTTTGGTGATTGATTTGACAAATTCTTACCGTTATTATACAACAACAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGAGATTCTGTACCTGACAACAAGTCAGTCAATATGTTTGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACATTCAAAGAAGTATATTCTTGTCCATTGCACTCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAACGTTTTCCGATGCACGGCCTCCTGGAATTTACAAGCCAGATTACATTGATGCATTATATGCCTTTTATCATGAAAAAAAACCTGAAATGGTTGTTTGCCCACCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGTGAAGCAGTTCCGGATGACGACGATGATGGGGGTTCTGCGGCTCCGTTGAATGAAAATCATGATGATGGTACTCAAATGATGACAAATGATGATATATTGGGAGATGAGATACCTGAGGACCAGGAACGTGCTTTAAAACACTTTTGCTATCAAATGCTTAAATTGAATGCTGGAGTGAGGAGGAAAGACTTTTGGTTGCTCTCTACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCACATGATGCCGATGGTCTAATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTGAAGTGGAAATATCCTGAAATGAACTCAGTCGACTTCCTATTTGAGGTTTTGGGTGAAGATGATTCTCAGATTCTTATTTTGTTCGAACGTGGAAAGAGGAAAACGATGGATGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTTGAGTGTTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTACAAAAAGGTCATGCGCAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAGGAGATTCACGAGATAATACGCTTGCCCATGTATGCTGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGGCTGGCGAGTTGTATGATCCAGTTATTGCACTTGATAGATGTGAGGGCGGACACATGAAATTCTCCGTGATTTTTCTTTTGATTTGTTTAATTCTCTTTGCTCGGTCGAAATGCGTTCACGGTGAAGAGGCCAAGGAAAACAAACTTCGGGAGCGAGAAGCCTCCGATGATGTCCTTGGATATCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACGGAAGTGAGTTCTAGCATATATGCCACGCCCTTGATCGCTGATGTTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTCTTGAAGGATCTGATGGAGATAAAATGCCAGGCTGGCCTGCTTTTCATCAATCAACTGTGCACGCTAGTCCTCTTCTATATGATATTGACAAAGATGGTATGAGGGAAATAGCTTTGGGAACATACAATGGAGAAGTACTCTTTTTCAGGGTGTCAGGATATATGATGCCAGACAAGTTAAAGATACCACGTCTCCGTGTGCGCAAGAATTGGTATGTGAATCTAAATTCAGTTCCAGTGGACCGGTTTCATCCAGATGTTCATGATGAACAACTTGTCATGGAAGCAAATAAGACAAAATCAATGGCTCTTACCAAATCAACACAAAAGCTGAATGATTCAGATTTGGTGAAGAATAGTAAGGTAAACGACAGCAATGTTGTACCAGATATTGTCCTACCTACAAGCATGACCAACAATACTTCTACGAATCGTACTGGAATACTTGATGGTAAGAAAGGAACTGGGATCAGTAGACGACTTCTGAAAGGTGGTGACTCCAAACAATCTCAAGAAGATGGTTCTAGGTCCAAGGAAGACGGTAGTGGAGATGCTCATGTTGCCACCGTTGAAAGTGAAGAAGCTTTGGAAGCAGAGGCTGATTCATCATTTGAGATATTCCGTGAAAATGATGAGCTGGCTGATGATTACAGTCAAGAAGATGATGATTATAACAATGGATCCACGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTAGAGGAGTATGTGGATATTGACGCACATTTGTTGTGCACTCCTGTCATAGCTGACATTGACAATGATGGAGTGTCTGAAATGATTGTAGCTGTTTCATACTTTTTTGATCATGAGAAATTGATGACCTTCTTTGATAATAGGTACTATGACAACCCAGAGCACATGAAAGAATTGGGCGATATTGATATTGGGAAATATGTAGCTGGTGCCATTGTTGTTTTCGATCTGGATTCGAAGCAAGTGAAGTGGATAACTGAACTAGACTTGAGCATAGATTCTGCAAAATTTCTTGCTTATATATATTCCTCCCCTACTGTCATTGATTTGGATGGTGATGGGAATTTGGATATTCTTGTTGGAACTTCTTTTGGCTTGTTCTACATCTTGGATCATCATGGCAAGGTGAGAGAAAACTTTCCTCTTCAAATGGCTGATATTACGGGAGCAGTTGTTGCAGCTGATATCAATGATGATGGAAAAATTGAACTTGTGGCTACGGATTCACATGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAAAGAATCTAAAAAGCCTCATACCACAGGGTCCATCCATTGGCGATGTCGATGGGGACGGCGATACTGATGTGGTGGTGCCAACAGTATCAGGAAATATATATGTTCTAAGTGGCAAGGACGGGTCATTTGTTCGTCCATACCCCTATAGAACCCATGGAAGAGTAACGAATCAAATTCTTCTCGTTGATCTGAACAAACGTGATGACAAAAAGAAGGGACTTACTTTAATCACATCATCATTTGATGGGTATCTATATCTCATTGATGGACCTACATCGTGTGCTGATGTTATCGACATCGGCGAGACTTCATATAGTATGGTTCTTGCTGATAATGTTGATGGTGGAGACGATCTTGATCTTATTGTCACAACCATGAATGGAAATGTTTTCTGCTTTTCAACCCCTTCTCCTCATCATCCACTCAAGACATGGAGATCAGCTAATCAAGGAAGAAACAATGTTGCAGTCCGGCACAACCGTGAAGGCATTTTCGTTTCGCATTCGTCTAGAACATACCGTGACGAGGAAGGCAAGAACTTCTGGATGGAGATCGAGATTGTAGACCGTTACAGAAACCCATCTGGGACTCAAGCACCATATAACGTTACCACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAGAGGAGGATAAAACAGAACCAGATGTTCAAAGAACCGGGCAAGCATCGGATTGAACTGCCGACAGTGAGTGCAAGGACCACAGCCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCAGATGAGTTCTCCCTCACATTCCATGTGTATTATTACAAGTTCCTGAAGTGGCTTCTTGTCCTCCCAATGCTTGCAATGTTTGATCGTTCGCTAAGCAACTCTTCTTCTCTTCTTTTTGATATGAAACCAAATCGCAAGCTCAAGAAAGCTGATTCATCTTCGAAGCTTGTATTGGAGGAAATTATCGGTACCACAACAAAGAACAACAATGGATTGGCTTCCAATGTAAATTCTCCGAACTGCGTCTATTTGACCGGATGCGTTGTGGTGGTTCATAATGTTCACTCTGGTACGCAATCGCACCTCGTGGTGCCTCATCGGTTGTGCAAACCTCTGAGCTGTGTTGCAATGTCTCTGGATGGCCGCTTTGTTGCTGCTGGAGAGTCAGGGCCTCAACCCGCAGTATTTGTGTGGGACTTAGCTGGCATGGCCTTTCTATCAGAGCTGAAAGGTCATCTGTATGGTGTTGCTTGTCTTGCCTTTTCACCTGATGATTCAAAATCCATTTTAACCGCTGGGAAGAAGCACTTGAAGTTCTGGACAATTACATCCCCTAAGACCCAGTTTAATTTAGGGACAAGTTCATTGTCTTTGCATGGAAAACCTGTTAATCTTGGTGCCCATCAAGGAAGCTCATTTGTTTCTATCACCTCTGGCTTGTCGACCGACGGTAGCTCAGGTGAAGTCTTTCCCATGTATGCATTGACTGAATCAGGTGTCCTTTGCCTCGTGAACTCAGGATTTTCAGTTACGAAGTCCGTCGATAAATGTTTCGCTGTATCTGCATCTAGCAAGTTAGTTGCTTGTGCCTGCAGCAATGGAATAGTACGACTTTATGATGCTGAGAGTCTCCAATATGGAGGAAGTTTCACCTATTCAAGATCCAAGCAATTCGACGGGGAAAGCAATATGGTTCATCTCATGAAAGATGATGGAAATGATCTTCGAAGCTTACCTGTTCTTCCTGATGCGGTTGCATGTTTTTTTTCAACCTCAGAAAAGCTTGTGGTTATTTATGGAGATCACAATCTTAACATATGGGATATCCACGACGTGAAGCAGGTGACCAGGTCTTGTGTGCTAGTTTCACATTCTGCTTGCATATGGGATATCAAGGTTCTTTGTTGTGAGAACATGCACGATCCATCTCTTGCTTGTGCTGCTAGAGGTTGTTCAGGAGGAATGTCTTTTGCAACATGCTCAGCAGATGGTACTATTAGGTTGTGGGATCTAGCTTTGGAACCTGATTCAGAAGATGCAATGGACAAGCAAGTACGACAAGAGACCACTACACGCTTAGAAAGTGCTGGGATATTTGATCGAGAAACTGTGGAGGCTGGTTTGAACTCTCGAGACTTTCGTTCTCTGGCAGCGAGTTCAGATGGAAAATACCTTGCCGCTGGTGATTGTGATGGAAACATTCACATATTTAACCTGCTTACTTCTGATTATACATGTCTTCAGGCGAGCCATTGGAACTAG 5466 42.65 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIESGASIARREREERKRRLKRDRSIERPVHEYQQPARDQFYPAKNQKYDRNRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTTDLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKTFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGSAAPLNENHDDGTQMMTNDDILGDEIPEDQERALKHFCYQMLKLNAGVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVLGEDDSQILILFERGKRKTMDGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRRAGELYDPVIALDRCEGGHMKFSVIFLLICLILFARSKCVHGEEAKENKLREREASDDVLGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADVNSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGMREIALGTYNGEVLFFRVSGYMMPDKLKIPRLRVRKNWYVNLNSVPVDRFHPDVHDEQLVMEANKTKSMALTKSTQKLNDSDLVKNSKVNDSNVVPDIVLPTSMTNNTSTNRTGILDGKKGTGISRRLLKGGDSKQSQEDGSRSKEDGSGDAHVATVESEEALEAEADSSFEIFRENDELADDYSQEDDDYNNGSTWGDEEWTEVKHEKVEEYVDIDAHLLCTPVIADIDNDGVSEMIVAVSYFFDHEKLMTFFDNRYYDNPEHMKELGDIDIGKYVAGAIVVFDLDSKQVKWITELDLSIDSAKFLAYIYSSPTVIDLDGDGNLDILVGTSFGLFYILDHHGKVRENFPLQMADITGAVVAADINDDGKIELVATDSHGNVAAWTAQGQEIWEKNLKSLIPQGPSIGDVDGDGDTDVVVPTVSGNIYVLSGKDGSFVRPYPYRTHGRVTNQILLVDLNKRDDKKKGLTLITSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKTWRSANQGRNNVAVRHNREGIFVSHSSRTYRDEEGKNFWMEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERRIKQNQMFKEPGKHRIELPTVSARTTATVLVEMVDKNGLYFSDEFSLTFHVYYYKFLKWLLVLPMLAMFDRSLSNSSSLLFDMKPNRKLKKADSSSKLVLEEIIGTTTKNNNGLASNVNSPNCVYLTGCVVVVHNVHSGTQSHLVVPHRLCKPLSCVAMSLDGRFVAAGESGPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDDSKSILTAGKKHLKFWTITSPKTQFNLGTSSLSLHGKPVNLGAHQGSSFVSITSGLSTDGSSGEVFPMYALTESGVLCLVNSGFSVTKSVDKCFAVSASSKLVACACSNGIVRLYDAESLQYGGSFTYSRSKQFDGESNMVHLMKDDGNDLRSLPVLPDAVACFFSTSEKLVVIYGDHNLNIWDIHDVKQVTRSCVLVSHSACIWDIKVLCCENMHDPSLACAARGCSGGMSFATCSADGTIRLWDLALEPDSEDAMDKQVRQETTTRLESAGIFDRETVEAGLNSRDFRSLAASSDGKYLAAGDCDGNIHIFNLLTSDYTCLQASHWN 1821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5664956 5692722 + CmoCh07G010890.1 Cmo07g01089 386397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01089 1821 CDD RNA_5'-triphosphatase 89 255 - -
Cmo07g01089 1821 Pfam WD domain, G-beta repeat 1474 1508 IPR001680 GO:0005515
Cmo07g01089 1821 Pfam WD domain, G-beta repeat 1691 1738 IPR001680 GO:0005515
Cmo07g01089 1821 Pfam mRNA capping enzyme, catalytic domain 316 393 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cmo07g01089 1821 SMART WD40_4 1682 1738 IPR001680 GO:0005515
Cmo07g01089 1821 SMART WD40_4 1639 1676 IPR001680 GO:0005515
Cmo07g01089 1821 SMART WD40_4 1111 1158 IPR001680 GO:0005515
Cmo07g01089 1821 SMART WD40_4 1575 1608 IPR001680 GO:0005515
Cmo07g01089 1821 SMART WD40_4 1424 1467 IPR001680 GO:0005515
Cmo07g01089 1821 SMART WD40_4 1769 1806 IPR001680 GO:0005515
Cmo07g01089 1821 SMART WD40_4 1470 1509 IPR001680 GO:0005515
Cmo07g01089 1821 MobiDBLite consensus disorder prediction 807 835 - -
Cmo07g01089 1821 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 252 IPR000387 GO:0016311|GO:0016791
Cmo07g01089 1821 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 784 1356 - -
Cmo07g01089 1821 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 548 769 - -
Cmo07g01089 1821 Pfam FG-GAP-like repeat 1039 1095 IPR013517 -
Cmo07g01089 1821 ProSitePatterns Tyrosine specific protein phosphatases active site. 205 215 IPR016130 GO:0016311|GO:0016791
Cmo07g01089 1821 Gene3D - 1560 1820 IPR015943 GO:0005515
Cmo07g01089 1821 Gene3D Protein tyrosine phosphatase superfamily 82 294 IPR029021 -
Cmo07g01089 1821 MobiDBLite consensus disorder prediction 278 315 - -
Cmo07g01089 1821 Gene3D - 334 413 - -
Cmo07g01089 1821 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Cmo07g01089 1821 ProSiteProfiles Trp-Asp (WD) repeats profile. 1477 1518 IPR001680 GO:0005515
Cmo07g01089 1821 Gene3D - 1391 1498 IPR015943 GO:0005515
Cmo07g01089 1821 MobiDBLite consensus disorder prediction 775 791 - -
Cmo07g01089 1821 SUPERFAMILY Integrin alpha N-terminal domain 595 1134 IPR028994 -
Cmo07g01089 1821 MobiDBLite consensus disorder prediction 1 60 - -
Cmo07g01089 1821 MobiDBLite consensus disorder prediction 775 845 - -
Cmo07g01089 1821 SUPERFAMILY Nucleic acid-binding proteins 396 509 IPR012340 -
Cmo07g01089 1821 Gene3D - 425 501 IPR012340 -
Cmo07g01089 1821 PANTHER - 784 1356 IPR045232 -
Cmo07g01089 1821 PANTHER - 548 769 IPR045232 -
Cmo07g01089 1821 Pfam mRNA capping enzyme, C-terminal domain 398 492 IPR013846 -
Cmo07g01089 1821 MobiDBLite consensus disorder prediction 22 60 - -
Cmo07g01089 1821 SMART dsp_5 120 260 IPR020422 GO:0006470|GO:0008138
Cmo07g01089 1821 Gene3D - 930 1209 IPR015943 GO:0005515
Cmo07g01089 1821 ProSiteProfiles Trp-Asp (WD) repeats profile. 1725 1739 IPR001680 GO:0005515
Cmo07g01089 1821 ProSiteProfiles Dual specificity protein phosphatase domain profile. 113 264 IPR020422 GO:0006470|GO:0008138
Cmo07g01089 1821 SUPERFAMILY WD40 repeat-like 1432 1808 IPR036322 GO:0005515
Cmo07g01089 1821 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 279 394 - -
Cmo07g01089 1821 Pfam Dual specificity phosphatase, catalytic domain 138 258 IPR000340 GO:0008138|GO:0016311
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00383 Cmo07g01089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00383 Cmo-Chr3:4733130 Cmo07g01089 Cmo-Chr7:5664956 0 transposed
Cmo03g00384 Cmo-Chr3:4741476 Cmo07g01089 Cmo-Chr7:5664956 1.09E-111 transposed
Cmo03g00382 Cmo-Chr3:4722548 Cmo07g01089 Cmo-Chr7:5664956 5.69E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01089 - - cpep:111781072 1517.29