Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g01089 | ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACACATAGAGTCCGGTGCCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGACGGTTGAAGAGAGATCGCTCTATTGAGAGACCGGTGCATGAATACCAGCAACCTGCACGGGATCAGTTTTACCCTGCTAAAAACCAAAAATATGATAGAAACAGGCTTCCCCCAGGTTGGTTGGATTGCCCTGCGTTTGGTCAAGAAATATGCTGCATGATTCCTTCCAAGGTTCCTCTGGGTGAATCCTTCAATGACTGTATAACACCTGGTAAAAGATACTCGTTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGGAAACTCGGTTTGGTGATTGATTTGACAAATTCTTACCGTTATTATACAACAACAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGAGATTCTGTACCTGACAACAAGTCAGTCAATATGTTTGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACATTCAAAGAAGTATATTCTTGTCCATTGCACTCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAACGTTTTCCGATGCACGGCCTCCTGGAATTTACAAGCCAGATTACATTGATGCATTATATGCCTTTTATCATGAAAAAAAACCTGAAATGGTTGTTTGCCCACCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGTGAAGCAGTTCCGGATGACGACGATGATGGGGGTTCTGCGGCTCCGTTGAATGAAAATCATGATGATGGTACTCAAATGATGACAAATGATGATATATTGGGAGATGAGATACCTGAGGACCAGGAACGTGCTTTAAAACACTTTTGCTATCAAATGCTTAAATTGAATGCTGGAGTGAGGAGGAAAGACTTTTGGTTGCTCTCTACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCACATGATGCCGATGGTCTAATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTGAAGTGGAAATATCCTGAAATGAACTCAGTCGACTTCCTATTTGAGGTTTTGGGTGAAGATGATTCTCAGATTCTTATTTTGTTCGAACGTGGAAAGAGGAAAACGATGGATGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTTGAGTGTTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTACAAAAAGGTCATGCGCAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAGGAGATTCACGAGATAATACGCTTGCCCATGTATGCTGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGGCTGGCGAGTTGTATGATCCAGTTATTGCACTTGATAGATGTGAGGGCGGACACATGAAATTCTCCGTGATTTTTCTTTTGATTTGTTTAATTCTCTTTGCTCGGTCGAAATGCGTTCACGGTGAAGAGGCCAAGGAAAACAAACTTCGGGAGCGAGAAGCCTCCGATGATGTCCTTGGATATCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACGGAAGTGAGTTCTAGCATATATGCCACGCCCTTGATCGCTGATGTTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTCTTGAAGGATCTGATGGAGATAAAATGCCAGGCTGGCCTGCTTTTCATCAATCAACTGTGCACGCTAGTCCTCTTCTATATGATATTGACAAAGATGGTATGAGGGAAATAGCTTTGGGAACATACAATGGAGAAGTACTCTTTTTCAGGGTGTCAGGATATATGATGCCAGACAAGTTAAAGATACCACGTCTCCGTGTGCGCAAGAATTGGTATGTGAATCTAAATTCAGTTCCAGTGGACCGGTTTCATCCAGATGTTCATGATGAACAACTTGTCATGGAAGCAAATAAGACAAAATCAATGGCTCTTACCAAATCAACACAAAAGCTGAATGATTCAGATTTGGTGAAGAATAGTAAGGTAAACGACAGCAATGTTGTACCAGATATTGTCCTACCTACAAGCATGACCAACAATACTTCTACGAATCGTACTGGAATACTTGATGGTAAGAAAGGAACTGGGATCAGTAGACGACTTCTGAAAGGTGGTGACTCCAAACAATCTCAAGAAGATGGTTCTAGGTCCAAGGAAGACGGTAGTGGAGATGCTCATGTTGCCACCGTTGAAAGTGAAGAAGCTTTGGAAGCAGAGGCTGATTCATCATTTGAGATATTCCGTGAAAATGATGAGCTGGCTGATGATTACAGTCAAGAAGATGATGATTATAACAATGGATCCACGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTAGAGGAGTATGTGGATATTGACGCACATTTGTTGTGCACTCCTGTCATAGCTGACATTGACAATGATGGAGTGTCTGAAATGATTGTAGCTGTTTCATACTTTTTTGATCATGAGAAATTGATGACCTTCTTTGATAATAGGTACTATGACAACCCAGAGCACATGAAAGAATTGGGCGATATTGATATTGGGAAATATGTAGCTGGTGCCATTGTTGTTTTCGATCTGGATTCGAAGCAAGTGAAGTGGATAACTGAACTAGACTTGAGCATAGATTCTGCAAAATTTCTTGCTTATATATATTCCTCCCCTACTGTCATTGATTTGGATGGTGATGGGAATTTGGATATTCTTGTTGGAACTTCTTTTGGCTTGTTCTACATCTTGGATCATCATGGCAAGGTGAGAGAAAACTTTCCTCTTCAAATGGCTGATATTACGGGAGCAGTTGTTGCAGCTGATATCAATGATGATGGAAAAATTGAACTTGTGGCTACGGATTCACATGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAAAGAATCTAAAAAGCCTCATACCACAGGGTCCATCCATTGGCGATGTCGATGGGGACGGCGATACTGATGTGGTGGTGCCAACAGTATCAGGAAATATATATGTTCTAAGTGGCAAGGACGGGTCATTTGTTCGTCCATACCCCTATAGAACCCATGGAAGAGTAACGAATCAAATTCTTCTCGTTGATCTGAACAAACGTGATGACAAAAAGAAGGGACTTACTTTAATCACATCATCATTTGATGGGTATCTATATCTCATTGATGGACCTACATCGTGTGCTGATGTTATCGACATCGGCGAGACTTCATATAGTATGGTTCTTGCTGATAATGTTGATGGTGGAGACGATCTTGATCTTATTGTCACAACCATGAATGGAAATGTTTTCTGCTTTTCAACCCCTTCTCCTCATCATCCACTCAAGACATGGAGATCAGCTAATCAAGGAAGAAACAATGTTGCAGTCCGGCACAACCGTGAAGGCATTTTCGTTTCGCATTCGTCTAGAACATACCGTGACGAGGAAGGCAAGAACTTCTGGATGGAGATCGAGATTGTAGACCGTTACAGAAACCCATCTGGGACTCAAGCACCATATAACGTTACCACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAGAGGAGGATAAAACAGAACCAGATGTTCAAAGAACCGGGCAAGCATCGGATTGAACTGCCGACAGTGAGTGCAAGGACCACAGCCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCAGATGAGTTCTCCCTCACATTCCATGTGTATTATTACAAGTTCCTGAAGTGGCTTCTTGTCCTCCCAATGCTTGCAATGTTTGATCGTTCGCTAAGCAACTCTTCTTCTCTTCTTTTTGATATGAAACCAAATCGCAAGCTCAAGAAAGCTGATTCATCTTCGAAGCTTGTATTGGAGGAAATTATCGGTACCACAACAAAGAACAACAATGGATTGGCTTCCAATGTAAATTCTCCGAACTGCGTCTATTTGACCGGATGCGTTGTGGTGGTTCATAATGTTCACTCTGGTACGCAATCGCACCTCGTGGTGCCTCATCGGTTGTGCAAACCTCTGAGCTGTGTTGCAATGTCTCTGGATGGCCGCTTTGTTGCTGCTGGAGAGTCAGGGCCTCAACCCGCAGTATTTGTGTGGGACTTAGCTGGCATGGCCTTTCTATCAGAGCTGAAAGGTCATCTGTATGGTGTTGCTTGTCTTGCCTTTTCACCTGATGATTCAAAATCCATTTTAACCGCTGGGAAGAAGCACTTGAAGTTCTGGACAATTACATCCCCTAAGACCCAGTTTAATTTAGGGACAAGTTCATTGTCTTTGCATGGAAAACCTGTTAATCTTGGTGCCCATCAAGGAAGCTCATTTGTTTCTATCACCTCTGGCTTGTCGACCGACGGTAGCTCAGGTGAAGTCTTTCCCATGTATGCATTGACTGAATCAGGTGTCCTTTGCCTCGTGAACTCAGGATTTTCAGTTACGAAGTCCGTCGATAAATGTTTCGCTGTATCTGCATCTAGCAAGTTAGTTGCTTGTGCCTGCAGCAATGGAATAGTACGACTTTATGATGCTGAGAGTCTCCAATATGGAGGAAGTTTCACCTATTCAAGATCCAAGCAATTCGACGGGGAAAGCAATATGGTTCATCTCATGAAAGATGATGGAAATGATCTTCGAAGCTTACCTGTTCTTCCTGATGCGGTTGCATGTTTTTTTTCAACCTCAGAAAAGCTTGTGGTTATTTATGGAGATCACAATCTTAACATATGGGATATCCACGACGTGAAGCAGGTGACCAGGTCTTGTGTGCTAGTTTCACATTCTGCTTGCATATGGGATATCAAGGTTCTTTGTTGTGAGAACATGCACGATCCATCTCTTGCTTGTGCTGCTAGAGGTTGTTCAGGAGGAATGTCTTTTGCAACATGCTCAGCAGATGGTACTATTAGGTTGTGGGATCTAGCTTTGGAACCTGATTCAGAAGATGCAATGGACAAGCAAGTACGACAAGAGACCACTACACGCTTAGAAAGTGCTGGGATATTTGATCGAGAAACTGTGGAGGCTGGTTTGAACTCTCGAGACTTTCGTTCTCTGGCAGCGAGTTCAGATGGAAAATACCTTGCCGCTGGTGATTGTGATGGAAACATTCACATATTTAACCTGCTTACTTCTGATTATACATGTCTTCAGGCGAGCCATTGGAACTAG | 5466 | 42.65 | MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIESGASIARREREERKRRLKRDRSIERPVHEYQQPARDQFYPAKNQKYDRNRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTTDLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKTFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGSAAPLNENHDDGTQMMTNDDILGDEIPEDQERALKHFCYQMLKLNAGVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVLGEDDSQILILFERGKRKTMDGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRRAGELYDPVIALDRCEGGHMKFSVIFLLICLILFARSKCVHGEEAKENKLREREASDDVLGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADVNSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGMREIALGTYNGEVLFFRVSGYMMPDKLKIPRLRVRKNWYVNLNSVPVDRFHPDVHDEQLVMEANKTKSMALTKSTQKLNDSDLVKNSKVNDSNVVPDIVLPTSMTNNTSTNRTGILDGKKGTGISRRLLKGGDSKQSQEDGSRSKEDGSGDAHVATVESEEALEAEADSSFEIFRENDELADDYSQEDDDYNNGSTWGDEEWTEVKHEKVEEYVDIDAHLLCTPVIADIDNDGVSEMIVAVSYFFDHEKLMTFFDNRYYDNPEHMKELGDIDIGKYVAGAIVVFDLDSKQVKWITELDLSIDSAKFLAYIYSSPTVIDLDGDGNLDILVGTSFGLFYILDHHGKVRENFPLQMADITGAVVAADINDDGKIELVATDSHGNVAAWTAQGQEIWEKNLKSLIPQGPSIGDVDGDGDTDVVVPTVSGNIYVLSGKDGSFVRPYPYRTHGRVTNQILLVDLNKRDDKKKGLTLITSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKTWRSANQGRNNVAVRHNREGIFVSHSSRTYRDEEGKNFWMEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERRIKQNQMFKEPGKHRIELPTVSARTTATVLVEMVDKNGLYFSDEFSLTFHVYYYKFLKWLLVLPMLAMFDRSLSNSSSLLFDMKPNRKLKKADSSSKLVLEEIIGTTTKNNNGLASNVNSPNCVYLTGCVVVVHNVHSGTQSHLVVPHRLCKPLSCVAMSLDGRFVAAGESGPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDDSKSILTAGKKHLKFWTITSPKTQFNLGTSSLSLHGKPVNLGAHQGSSFVSITSGLSTDGSSGEVFPMYALTESGVLCLVNSGFSVTKSVDKCFAVSASSKLVACACSNGIVRLYDAESLQYGGSFTYSRSKQFDGESNMVHLMKDDGNDLRSLPVLPDAVACFFSTSEKLVVIYGDHNLNIWDIHDVKQVTRSCVLVSHSACIWDIKVLCCENMHDPSLACAARGCSGGMSFATCSADGTIRLWDLALEPDSEDAMDKQVRQETTTRLESAGIFDRETVEAGLNSRDFRSLAASSDGKYLAAGDCDGNIHIFNLLTSDYTCLQASHWN | 1821 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5664956 | 5692722 | + | CmoCh07G010890.1 | Cmo07g01089 | 386397 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g01089 | 1821 | CDD | RNA_5'-triphosphatase | 89 | 255 | - | - | |
| Cmo07g01089 | 1821 | Pfam | WD domain, G-beta repeat | 1474 | 1508 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | Pfam | WD domain, G-beta repeat | 1691 | 1738 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | Pfam | mRNA capping enzyme, catalytic domain | 316 | 393 | IPR001339 | GO:0004484|GO:0005524|GO:0006370 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1682 | 1738 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1639 | 1676 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1111 | 1158 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1575 | 1608 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1424 | 1467 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1769 | 1806 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | SMART | WD40_4 | 1470 | 1509 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 807 | 835 | - | - | |
| Cmo07g01089 | 1821 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 183 | 252 | IPR000387 | GO:0016311|GO:0016791 | |
| Cmo07g01089 | 1821 | PANTHER | PROTEIN DEFECTIVE IN EXINE FORMATION 1 | 784 | 1356 | - | - | |
| Cmo07g01089 | 1821 | PANTHER | PROTEIN DEFECTIVE IN EXINE FORMATION 1 | 548 | 769 | - | - | |
| Cmo07g01089 | 1821 | Pfam | FG-GAP-like repeat | 1039 | 1095 | IPR013517 | - | |
| Cmo07g01089 | 1821 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 205 | 215 | IPR016130 | GO:0016311|GO:0016791 | |
| Cmo07g01089 | 1821 | Gene3D | - | 1560 | 1820 | IPR015943 | GO:0005515 | |
| Cmo07g01089 | 1821 | Gene3D | Protein tyrosine phosphatase superfamily | 82 | 294 | IPR029021 | - | |
| Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 278 | 315 | - | - | |
| Cmo07g01089 | 1821 | Gene3D | - | 334 | 413 | - | - | |
| Cmo07g01089 | 1821 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 86 | 275 | IPR029021 | - | |
| Cmo07g01089 | 1821 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1477 | 1518 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | Gene3D | - | 1391 | 1498 | IPR015943 | GO:0005515 | |
| Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 775 | 791 | - | - | |
| Cmo07g01089 | 1821 | SUPERFAMILY | Integrin alpha N-terminal domain | 595 | 1134 | IPR028994 | - | |
| Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 775 | 845 | - | - | |
| Cmo07g01089 | 1821 | SUPERFAMILY | Nucleic acid-binding proteins | 396 | 509 | IPR012340 | - | |
| Cmo07g01089 | 1821 | Gene3D | - | 425 | 501 | IPR012340 | - | |
| Cmo07g01089 | 1821 | PANTHER | - | 784 | 1356 | IPR045232 | - | |
| Cmo07g01089 | 1821 | PANTHER | - | 548 | 769 | IPR045232 | - | |
| Cmo07g01089 | 1821 | Pfam | mRNA capping enzyme, C-terminal domain | 398 | 492 | IPR013846 | - | |
| Cmo07g01089 | 1821 | MobiDBLite | consensus disorder prediction | 22 | 60 | - | - | |
| Cmo07g01089 | 1821 | SMART | dsp_5 | 120 | 260 | IPR020422 | GO:0006470|GO:0008138 | |
| Cmo07g01089 | 1821 | Gene3D | - | 930 | 1209 | IPR015943 | GO:0005515 | |
| Cmo07g01089 | 1821 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1725 | 1739 | IPR001680 | GO:0005515 | |
| Cmo07g01089 | 1821 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 113 | 264 | IPR020422 | GO:0006470|GO:0008138 | |
| Cmo07g01089 | 1821 | SUPERFAMILY | WD40 repeat-like | 1432 | 1808 | IPR036322 | GO:0005515 | |
| Cmo07g01089 | 1821 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 279 | 394 | - | - | |
| Cmo07g01089 | 1821 | Pfam | Dual specificity phosphatase, catalytic domain | 138 | 258 | IPR000340 | GO:0008138|GO:0016311 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g01089 | - | - | - | cpep:111781072 | 1517.29 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo03g00383 | Cmo07g01089 | CST |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g00383 | Cmo-Chr3:4733130 | Cmo07g01089 | Cmo-Chr7:5664956 | 0 | transposed | |
| Cmo03g00384 | Cmo-Chr3:4741476 | Cmo07g01089 | Cmo-Chr7:5664956 | 1.09E-111 | transposed | |
| Cmo03g00382 | Cmo-Chr3:4722548 | Cmo07g01089 | Cmo-Chr7:5664956 | 5.69E-13 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi8g853 | Blo01g01243 | Blo12g00395 | Bda01g00178 | . | . | . | . | . | . | . | . | Cma07g01044 | Car03g00326 | Car07g01026 | Sed14g0658 | Cpe10g00316 | . | Bhi03g02110 | Tan03g0827 | Cmetu08g0203 | . | Hepe04g0777 | . | . | . | . | . | . | . | . | . | . | . | Cone13ag1383 | Cone19ag1374 | Lsi01g01523 | Csa04g01590 | Chy08g00977 | . | . | . | . | . | Bpe04g00767 | Bpe02g00885 | Bma01g01829 | . | . | Cmo03g00383 | Cmo07g01089 | . | . | . | . | . | Cpe19g00501 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cme08g02498 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cmo11g01384 | CCT | 494 | 1100 | Protein tyrosine phosphatase (PTP) family | AT3G50110 | 56.4 | 9.7e-181 | 630.9 | |
| Cmo07g00697 | . | 33 | 652 | Protein tyrosine phosphatase (PTP) family | AT3G50110 | 55.9 | 4.5e-178 | 622.1 | |
| Cmo19g00605 | . | 618 | 1120 | Protein tyrosine phosphatase (PTP) family | AT3G50110 | 53.8 | 1.6e-151 | 533.9 | |
| Cmo11g01191 | . | 1 | 415 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 65.1 | 1.1e-156 | 550.4 | |
| Cmo14g00573 | . | 1 | 391 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 65.1 | 1.7e-149 | 526.6 | |
| Cmo15g00495 | . | 1 | 848 | Protein tyrosine phosphatase (PTP) family | AT3G10550 | 66.2 | 0.0e+00 | 1120.9 | |
| Cmo15g00495 | . | 1 | 848 | Protein tyrosine phosphatase (PTP) family | AT5G04540 | 62.7 | 2.5e-309 | 1058.5 | |
| Cmo10g00505 | . | 1 | 1204 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 54.0 | 0.0e+00 | 1100.9 | |
| Cmo11g00464 | . | 1 | 1234 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 55.2 | 0.0e+00 | 1086.2 | |
| Cmo01g01711 | CST | 1 | 1368 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 51.8 | 5.5e-300 | 1028.1 | |
| Cmo09g00417 | CST | 57 | 1373 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 51.3 | 2.3e-298 | 1022.7 | |
| Cmo11g00189 | . | 1 | 380 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 61.3 | 3.6e-134 | 477.2 | |
| Cmo11g00187 | CST | 1 | 295 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 68.5 | 1.4e-109 | 395.6 | |
| Cmo19g00208 | . | 1030 | 1198 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 53.5 | 4.8e-38 | 157.9 | |
| Cmo09g01160 | . | 80 | 367 | Protein tyrosine phosphatase (PTP) family | AT1G71860 | 61.9 | 3.1e-109 | 392.5 | |
| Cmo10g00017 | . | 14 | 662 | Protein tyrosine phosphatase (PTP) family | AT5G23720 | 64.9 | 1.1e-230 | 797.3 | |
| Cmo10g00018 | . | 8 | 235 | Protein tyrosine phosphatase (PTP) family | AT5G23720 | 56.1 | 2.9e-56 | 218.0 | |
| Cmo08g01140 | . | 33 | 171 | Protein tyrosine phosphatase (PTP) family | AT3G06110 | 54.3 | 2.0e-40 | 162.9 | |
| Cmo19g01082 | . | 1 | 166 | Protein tyrosine phosphatase (PTP) family | AT2G04550 | 76.9 | 6.8e-71 | 264.2 | |
| Cmo11g02021 | . | 1 | 214 | Protein tyrosine phosphatase (PTP) family | AT2G04550 | 61.3 | 2.1e-64 | 242.7 | |
| Cmo18g00927 | . | 183 | 463 | Protein tyrosine phosphatase (PTP) family | AT3G52180 | 67.6 | 1.1e-110 | 397.1 | |
| Cmo04g01478 | . | 100 | 360 | Protein tyrosine phosphatase (PTP) family | AT3G52180 | 66.5 | 8.7e-105 | 377.5 | |
| Cmo04g01142 | . | 507 | 740 | Protein tyrosine phosphatase (PTP) family | AT3G10940 | 74.0 | 4.3e-104 | 375.2 | |
| Cmo11g01690 | . | 143 | 591 | Protein tyrosine phosphatase (PTP) family | AT3G01510 | 71.7 | 1.6e-201 | 699.5 | |
| Cmo20g00254 | CST | 43 | 207 | Protein tyrosine phosphatase (PTP) family | AT2G32960 | 66.0 | 1.2e-71 | 267.3 | |
| Cmo11g02016 | . | 45 | 211 | Protein tyrosine phosphatase (PTP) family | AT2G32960 | 62.4 | 1.3e-67 | 253.8 | |
| Cmo19g01077 | . | 45 | 206 | Protein tyrosine phosphatase (PTP) family | AT2G32960 | 63.5 | 2.9e-67 | 252.7 | |
| Cmo11g00963 | . | 3 | 170 | Protein tyrosine phosphatase (PTP) family | AT2G32960 | 50.5 | 7.0e-53 | 204.9 | |
| Cmo06g00821 | . | 1 | 333 | Protein tyrosine phosphatase (PTP) family | AT2G35680 | 55.6 | 3.4e-100 | 362.5 | |
| Cmo16g01171 | . | 1 | 333 | Protein tyrosine phosphatase (PTP) family | AT2G35680 | 53.8 | 5.1e-96 | 348.6 | |
| Cmo12g01314 | CST | 12 | 229 | Protein tyrosine phosphatase (PTP) family | AT2G35680 | 61.0 | 2.2e-78 | 290.0 | |
| Cmo05g01381 | CST | 22 | 229 | Protein tyrosine phosphatase (PTP) family | AT2G35680 | 61.5 | 4.8e-78 | 288.9 | |
| Cmo05g01381 | CST | 27 | 218 | Protein tyrosine phosphatase (PTP) family | AT5G56610 | 50.5 | 1.6e-46 | 183.3 | |
| Cmo16g01171 | . | 37 | 212 | Protein tyrosine phosphatase (PTP) family | AT5G56610 | 51.7 | 2.5e-44 | 176.0 | |
| Cmo06g00821 | . | 37 | 209 | Protein tyrosine phosphatase (PTP) family | AT5G56610 | 50.9 | 9.7e-44 | 174.1 | |
| Cmo20g00254 | CST | 40 | 208 | Protein tyrosine phosphatase (PTP) family | AT4G03960 | 76.9 | 2.7e-76 | 282.3 | |
| Cmo11g02016 | . | 42 | 211 | Protein tyrosine phosphatase (PTP) family | AT4G03960 | 71.8 | 3.4e-71 | 265.4 | |
| Cmo19g01077 | . | 42 | 206 | Protein tyrosine phosphatase (PTP) family | AT4G03960 | 73.9 | 3.7e-70 | 261.9 | |
| Cmo11g00963 | . | 5 | 170 | Protein tyrosine phosphatase (PTP) family | AT4G03960 | 58.4 | 1.1e-56 | 217.2 | |
| Cmo10g00860 | . | 15 | 170 | Protein tyrosine phosphatase (PTP) family | AT4G03960 | 60.3 | 4.4e-55 | 211.8 | |
| Cmo11g00963 | . | 1 | 197 | Protein tyrosine phosphatase (PTP) family | AT3G02800 | 72.2 | 5.7e-82 | 301.2 | |
| Cmo10g00860 | . | 1 | 196 | Protein tyrosine phosphatase (PTP) family | AT3G02800 | 68.9 | 1.1e-77 | 287.0 | |
| Cmo20g00254 | CST | 37 | 198 | Protein tyrosine phosphatase (PTP) family | AT3G02800 | 61.7 | 2.7e-55 | 212.6 | |
| Cmo19g01077 | . | 40 | 200 | Protein tyrosine phosphatase (PTP) family | AT3G02800 | 58.4 | 2.9e-54 | 209.1 | |
| Cmo11g02016 | . | 40 | 200 | Protein tyrosine phosphatase (PTP) family | AT3G02800 | 56.5 | 7.2e-53 | 204.5 | |
| Cmo04g01282 | CST | 1 | 186 | Protein tyrosine phosphatase (PTP) family | AT3G55270 | 65.8 | 1.5e-61 | 235.3 | |
| Cmo04g00237 | CST | 1 | 187 | Protein tyrosine phosphatase (PTP) family | AT3G55270 | 62.8 | 2.0e-58 | 224.9 | |
| Cmo11g01191 | . | 1 | 415 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 65.1 | 1.1e-156 | 550.4 | |
| Cmo14g00573 | . | 1 | 391 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 65.1 | 1.7e-149 | 526.6 | |
| Cmo11g01384 | CCT | 496 | 1100 | Protein tyrosine phosphatase (PTP) family | AT3G19420 | 63.5 | 1.5e-218 | 756.5 | |
| Cmo07g00697 | . | 23 | 652 | Protein tyrosine phosphatase (PTP) family | AT3G19420 | 57.6 | 5.3e-192 | 668.3 | |
| Cmo19g00605 | . | 616 | 1121 | Protein tyrosine phosphatase (PTP) family | AT3G19420 | 59.2 | 6.3e-177 | 618.2 | |
| Cmo11g01384 | CCT | 494 | 1100 | Protein tyrosine phosphatase (PTP) family | AT3G50110 | 56.4 | 9.7e-181 | 630.9 | |
| Cmo07g00697 | . | 33 | 652 | Protein tyrosine phosphatase (PTP) family | AT3G50110 | 55.9 | 4.5e-178 | 622.1 | |
| Cmo19g00605 | . | 618 | 1120 | Protein tyrosine phosphatase (PTP) family | AT3G50110 | 53.8 | 1.6e-151 | 533.9 | |
| Cmo10g00505 | . | 1 | 1204 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 54.0 | 0.0e+00 | 1100.9 | |
| Cmo11g00464 | . | 1 | 1234 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 55.2 | 0.0e+00 | 1086.2 | |
| Cmo01g01711 | CST | 1 | 1368 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 51.8 | 5.5e-300 | 1028.1 | |
| Cmo09g00417 | CST | 57 | 1373 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 51.3 | 2.3e-298 | 1022.7 | |
| Cmo11g00189 | . | 1 | 380 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 61.3 | 3.6e-134 | 477.2 | |
| Cmo11g00187 | CST | 1 | 295 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 68.5 | 1.4e-109 | 395.6 | |
| Cmo19g00208 | . | 1030 | 1198 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 53.5 | 4.8e-38 | 157.9 | |
| Cmo15g00495 | . | 1 | 848 | Protein tyrosine phosphatase (PTP) family | AT3G10550 | 66.2 | 0.0e+00 | 1120.9 | |
| Cmo15g00495 | . | 1 | 848 | Protein tyrosine phosphatase (PTP) family | AT5G04540 | 62.7 | 2.5e-309 | 1058.5 | |
| Cmo02g01379 | . | 21 | 281 | Protein tyrosine phosphatase (PTP) family | AT3G44620 | 50.2 | 9.6e-66 | 247.7 | |
| Cmo16g01199 | . | 22 | 318 | Protein tyrosine phosphatase (PTP) family | AT2G35320 | 63.3 | 4.0e-111 | 398.7 | |
| Cmo03g00384 | . | 1 | 669 | Protein tyrosine phosphatase (PTP) family | AT3G09100 | 68.6 | 5.2e-273 | 937.6 | |
| Cmo07g01089 | CST | 1 | 515 | Protein tyrosine phosphatase (PTP) family | AT3G09100 | 52.4 | 2.5e-182 | 636.3 | |
| Cmo03g00384 | . | 1 | 669 | Protein tyrosine phosphatase (PTP) family | AT5G01290 | 66.1 | 3.4e-253 | 871.7 | |
| Cmo07g01089 | CST | 5 | 515 | Protein tyrosine phosphatase (PTP) family | AT5G01290 | 51.1 | 9.2e-174 | 607.8 | |
| Cmo03g00384 | . | 82 | 669 | Protein tyrosine phosphatase (PTP) family | AT5G28210 | 56.8 | 1.2e-183 | 640.6 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007157 | 1 | 3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 0 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 3 | 3 | 1 | 37 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cmo07g01089 | Cmo_Chr07 | FPKM | 1.152435 | 1.36295 | 3.053502 | 2.992838 | 5.232673 | 5.183251 | 4.523421 | 6.104629 | 6.928253 | 5.550484 |