Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01105 ATGGCTTCCCAAACAGAGGCTTGGCTACTGGAGAACGGCAGCGTTAAGTGCTTAACCAAAGAGAACCGACAAGGCCATGGCCGAAGCCTTCGGACAGCTCACAACATGTCGTCCTCTTCCCTCCGCATAAAGTCCGATTTGACCCTCGTCTCCAAAGTCCAATTCCCCTGCCTTAGGAACTTCCTCGCTCATCTTCAGGAGGTCCTTTTGGGAACTAAGCTTTCCGTTCTCTTCCCTGCCATTCCGCTAGCCGTTCTGGCTCAGAGTTATGCCTTTGGAAGACCTTGGATTTTTGCTTTGAGTTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACAGAGCAAATAGCTTATTTCACTGGTCCAACAGTTGGAGGGCTTTTGAATGCAACGTGTGGGAATGCAACAGAGATGATAATAGCAATTCTTGCACTTACAAAGGGAAAGATAGAAGTGGTGAAGTATTCTCTCTTGGGCTCTGTTCTTTCAAACCTTCTTCTTGTCCTTGGAACCTCTCTCTTCTCTGCTGGCATTGCCAATCTATCAACCCATCAAATTTTTGACAGAAGACAGGCAGATGTGAACTCACTGATGCTGATGCTGTCATTTCTGTGCCATTTATTGCCGTTATTATTTGGGTACGCCGCCGCCACCACCTCCGCCGTCGCAGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATCGTTATGCTCTTAGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACGCACCGCCAATTATTTGAAGCCCAGGAGGATGAAAACGACGACGTACCAGTAGAAGAGGCAGTTATTGGATTCTGGAGTGCATTTGCATGGCTCGTTGGAATGACACTGCTGATTGCTTTGCTGTCGGAATACGTTGTCAACACAATTGAGGAAGCGTCAACTACTTGGGATTTGTCGGTGAGTTTCCTCAGCATAATCTTACTCCCTATCGTTGGGAATGCAGCCGAACATGCCGGAGCTATCATCTTTGCCTTAAAAAATAAGTTGGACATAAGTTTGGGGGTTGCTTTGGGGTCAGCAACACAAATTGCACTTTTTGTGATTCCACTGTGTGTGATCGTTGCTTGGACAATGGGGGTGGATATGGATCTAAATTTCAACCTCATGGAAACGGCGTCGCTTGGATTAGCCATTATTACCACAGCCTTCGCCTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTGTTATGCTATGTTATTATTGCGGCTTGTTTCTATGTCTCCAACGCTCAAAAACAAGATGATAACAATATCCTCAATTTGGGAATCCAATCTAGAAGAATTCTCTTGAAGTCTCCTTGA 1362 46.77 MASQTEAWLLENGSVKCLTKENRQGHGRSLRTAHNMSSSSLRIKSDLTLVSKVQFPCLRNFLAHLQEVLLGTKLSVLFPAIPLAVLAQSYAFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIAILALTKGKIEVVKYSLLGSVLSNLLLVLGTSLFSAGIANLSTHQIFDRRQADVNSLMLMLSFLCHLLPLLFGYAAATTSAVAAAASTLHLSRASSIVMLLAYIAYLVFQLWTHRQLFEAQEDENDDVPVEEAVIGFWSAFAWLVGMTLLIALLSEYVVNTIEEASTTWDLSVSFLSIILLPIVGNAAEHAGAIIFALKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETASLGLAIITTAFALQDGTSHYIKGLVLLLCYVIIAACFYVSNAQKQDDNNILNLGIQSRRILLKSP 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5785240 5788876 - CmoCh07G011050.1 Cmo07g01105 386413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01105 453 Pfam Sodium/calcium exchanger protein 96 255 IPR004837 GO:0016021|GO:0055085
Cmo07g01105 453 Pfam Sodium/calcium exchanger protein 283 425 IPR004837 GO:0016021|GO:0055085
Cmo07g01105 453 TIGRFAM caca2: calcium/proton exchanger 60 426 - -
Cmo07g01105 453 TIGRFAM cax: calcium/proton exchanger 79 426 IPR004798 GO:0006816|GO:0015369
Cmo07g01105 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 439 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo07g01105 453 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 439 - -
Cmo07g01105 453 Gene3D - 276 428 IPR044880 -
Cmo07g01105 453 Gene3D - 125 275 IPR044880 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00224 Cmo07g01105 CCT
Cmo06g00224 Cmo07g01105 ECH
Cmo03g00362 Cmo07g01105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00692 Cmo-Chr1:3536729 Cmo07g01105 Cmo-Chr7:5785240 7.39E-74 dispersed
Cmo07g01105 Cmo-Chr7:5785240 Cmo20g00692 Cmo-Chr20:3416859 2.45E-114 dispersed
Cmo03g00362 Cmo-Chr3:4609713 Cmo07g01105 Cmo-Chr7:5785240 0 wgd
Cmo06g00224 Cmo-Chr6:1201700 Cmo07g01105 Cmo-Chr7:5785240 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01105 K07300 - csv:101213857 691.034