Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g01147 | ATGAGGGAAGAGCATTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCAGATGAACTCATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTAGCTTTCGATATTCAAAATCCCACCAATTGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCCCTACCCGGCTCCGGCAACGGAATTCCGCTGCCCAACTCGGGGGATTTCGGCGATTCCGCTGATTTAGGCTCTGGCGCTGGTAGCGACGAACCAGCCCGGACCCTCAAGCGGCCACGCTTAGTCTGGACTCCACAGCTCCACAAGCGATTCGTTGACGCTGTTGCCCATTTGGGGATCAAAAATGCTGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGCTTAACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGTATGCAGGGTTTATCCAGTGGTGGCGGCGCCGCCGCCGCAGCTGGCTTGGTTGCTTCCTCTGATCCCGCCACCGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCCGCTCGTGCTAGTTCAGACCACTTCATGCCCTTTGTTCCCATGGCCACTCTACAGCAGCACCACCACCACCTGCAGCAGATGGCCGCAGCATCTGTCGTCGCCCACCCTCAGCTCCAGCCCCCCTATCATCGTGGGCAGTTTGGGTCACCATCAAACGGCCAATTTGAGCATCCATTTTTAGGTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAGTTCAGTTCCAAATTACATTGAGGATTTGGAATCAGGCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA | 900 | 53.89 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNCSPPLPCPSPPLSNPLPGSGNGIPLPNSGDFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGAAAAAGLVASSDPATDHLFASSPVPPHLLHSARASSDHFMPFVPMATLQQHHHHLQQMAAASVVAHPQLQPPYHRGQFGSPSNGQFEHPFLGRQSQPIHRMGAPVHSSVPNYIEDLESGNASGGRKVLTLFPTGDD | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6151823 | 6152722 | - | CmoCh07G011470.1 | Cmo07g01147 | 386455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g01147 | 299 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Cmo07g01147 | 299 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 299 | - | - | |
Cmo07g01147 | 299 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 299 | IPR044841 | GO:0003700|GO:0006355 | |
Cmo07g01147 | 299 | Gene3D | - | 94 | 156 | - | - | |
Cmo07g01147 | 299 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677 | |
Cmo07g01147 | 299 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Cmo07g01147 | 299 | Pfam | Myb-like DNA-binding domain | 101 | 149 | IPR001005 | - | |
Cmo07g01147 | 299 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
Cmo07g01147 | 299 | MobiDBLite | consensus disorder prediction | 47 | 96 | - | - | |
Cmo07g01147 | 299 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00647 | Cmo-Chr1:3309475 | Cmo07g01147 | Cmo-Chr7:6151823 | 2.32E-43 | dispersed | |
Cmo03g01093 | Cmo-Chr3:8665321 | Cmo07g01147 | Cmo-Chr7:6151823 | 7.07E-158 | dispersed | |
Cmo07g01147 | Cmo-Chr7:6151823 | Cmo14g00500 | Cmo-Chr14:2480536 | 5.70E-117 | dispersed | |
Cmo07g01147 | Cmo-Chr7:6151823 | Cmo06g00028 | Cmo-Chr6:191731 | 4.61E-122 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10175 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g01147 | - | - | cmax:111467241 | 488.804 |