Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01147 ATGAGGGAAGAGCATTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCAGATGAACTCATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTAGCTTTCGATATTCAAAATCCCACCAATTGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCCCTACCCGGCTCCGGCAACGGAATTCCGCTGCCCAACTCGGGGGATTTCGGCGATTCCGCTGATTTAGGCTCTGGCGCTGGTAGCGACGAACCAGCCCGGACCCTCAAGCGGCCACGCTTAGTCTGGACTCCACAGCTCCACAAGCGATTCGTTGACGCTGTTGCCCATTTGGGGATCAAAAATGCTGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGCTTAACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGTATGCAGGGTTTATCCAGTGGTGGCGGCGCCGCCGCCGCAGCTGGCTTGGTTGCTTCCTCTGATCCCGCCACCGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCCGCTCGTGCTAGTTCAGACCACTTCATGCCCTTTGTTCCCATGGCCACTCTACAGCAGCACCACCACCACCTGCAGCAGATGGCCGCAGCATCTGTCGTCGCCCACCCTCAGCTCCAGCCCCCCTATCATCGTGGGCAGTTTGGGTCACCATCAAACGGCCAATTTGAGCATCCATTTTTAGGTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAGTTCAGTTCCAAATTACATTGAGGATTTGGAATCAGGCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 900 53.89 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNCSPPLPCPSPPLSNPLPGSGNGIPLPNSGDFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGAAAAAGLVASSDPATDHLFASSPVPPHLLHSARASSDHFMPFVPMATLQQHHHHLQQMAAASVVAHPQLQPPYHRGQFGSPSNGQFEHPFLGRQSQPIHRMGAPVHSSVPNYIEDLESGNASGGRKVLTLFPTGDD 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6151823 6152722 - CmoCh07G011470.1 Cmo07g01147 386455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01147 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cmo07g01147 299 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 299 - -
Cmo07g01147 299 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 299 IPR044841 GO:0003700|GO:0006355
Cmo07g01147 299 Gene3D - 94 156 - -
Cmo07g01147 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cmo07g01147 299 MobiDBLite consensus disorder prediction 47 62 - -
Cmo07g01147 299 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cmo07g01147 299 MobiDBLite consensus disorder prediction 279 299 - -
Cmo07g01147 299 MobiDBLite consensus disorder prediction 47 96 - -
Cmo07g01147 299 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00647 Cmo-Chr1:3309475 Cmo07g01147 Cmo-Chr7:6151823 2.32E-43 dispersed
Cmo03g01093 Cmo-Chr3:8665321 Cmo07g01147 Cmo-Chr7:6151823 7.07E-158 dispersed
Cmo07g01147 Cmo-Chr7:6151823 Cmo14g00500 Cmo-Chr14:2480536 5.70E-117 dispersed
Cmo07g01147 Cmo-Chr7:6151823 Cmo06g00028 Cmo-Chr6:191731 4.61E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10175 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01147 - - cmax:111467241 488.804