Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g01148 | ATGGCTACAAGACCAGTAGTTCCTCAACAAATCAGAGGTGAAGCGGCGATTGGAGGAGGAAAGCAGGGGAAGGGCGGGGCGGCGGTGGATGCAAGGAACCGCAGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGCTAATCGCCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCTCAAGCGGCTGCAAAAGCTGAAAATAATATGAAACAAGTGCCTGTTAAAGTAGATGGGGCTGCTCCCATTCTTGATGGTGGTGTTGTGGCCGTTAAGAAACCAGGAGCTCCCAAGGCTGCAACGAAGAAAGTTGTTTCCAAACCGAAAGCGGAGGTGATCGAGATAAGCCCGGATAAGGTCGAACAAGATCGGGGCAAGGAAGTGAAATGTGCTAACAAGAAAAAGGAAGAAGGGGTCTCAAAGAAGAAGGCGCAGACTCTCACCGCAGTCATGACGGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCAAAGGAACAGATAATTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGAATGAGAGTAGGCCTCATGACTATATGGATTCACAACCGGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCCGAAACATTCTACCTCACCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCGCCAGAGGTAAATGACTTTGTGTGCCTTTCAGATAGAGCATACACGAATGAACAGATACTAACGATGGAGAAAAGGATACTTGGGAAGCTGGAATGGACCATGACCGTGCCAACTCCATATGTTTTCCTCGCTCGGTTCATCAAGGCATCGAAGGACTCCGATCATGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTATGCCGCTCGATGCACGCTGAAGAAAAGCCCTGGTTGGGATGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATTGATTGTGCCAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAGTACTCCAGCTCCGAAAGGGGAGCGGTAGCATTACTTCAGCCACCCAAAGCTCTCTTGTTGACTCCTAATGGTCATTGA | 1365 | 47.03 | MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNMKQVPVKVDGAAPILDGGVVAVKKPGAPKAATKKVVSKPKAEVIEISPDKVEQDRGKEVKCANKKKEEGVSKKKAQTLTAVMTARSKAACGVTKKPKEQIIDIDAADVGNELAEVEYVEDIYKFYKEVENESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILTMEKRILGKLEWTMTVPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKSPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKALLLTPNGH | 454 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6157067 | 6159485 | - | CmoCh07G011480.1 | Cmo07g01148 | 386456 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g01148 | 454 | PANTHER | CYCLINS | 21 | 449 | IPR039361 | - | |
| Cmo07g01148 | 454 | SUPERFAMILY | Cyclin-like | 324 | 445 | IPR036915 | - | |
| Cmo07g01148 | 454 | SMART | cyclin_7 | 329 | 413 | IPR013763 | - | |
| Cmo07g01148 | 454 | SMART | cyclin_7 | 232 | 316 | IPR013763 | - | |
| Cmo07g01148 | 454 | CDD | CYCLIN | 323 | 412 | IPR013763 | - | |
| Cmo07g01148 | 454 | Gene3D | - | 212 | 323 | - | - | |
| Cmo07g01148 | 454 | ProSitePatterns | Cyclins signature. | 227 | 258 | IPR006671 | - | |
| Cmo07g01148 | 454 | Pfam | Cyclin, C-terminal domain | 325 | 443 | IPR004367 | - | |
| Cmo07g01148 | 454 | SUPERFAMILY | Cyclin-like | 187 | 322 | IPR036915 | - | |
| Cmo07g01148 | 454 | PANTHER | G2/MITOTIC-SPECIFIC CYCLIN S13-6 | 21 | 449 | - | - | |
| Cmo07g01148 | 454 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cmo07g01148 | 454 | Pfam | Cyclin, N-terminal domain | 198 | 322 | IPR006671 | - | |
| Cmo07g01148 | 454 | CDD | CYCLIN | 226 | 315 | IPR013763 | - | |
| Cmo07g01148 | 454 | SMART | Cyclin_C_2 | 325 | 444 | IPR004367 | - | |
| Cmo07g01148 | 454 | PIRSF | Cyclin_A_B_D_E | 1 | 453 | IPR039361 | - | |
| Cmo07g01148 | 454 | Gene3D | - | 198 | 439 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g01333 | Cmo-Chr2:7911851 | Cmo07g01148 | Cmo-Chr7:6157067 | 5.96E-135 | dispersed | |
| Cmo03g00655 | Cmo-Chr3:5920759 | Cmo07g01148 | Cmo-Chr7:6157067 | 1.18E-82 | dispersed | |
| Cmo07g00380 | Cmo-Chr7:1754220 | Cmo07g01148 | Cmo-Chr7:6157067 | 1.04E-84 | dispersed | |
| Cmo07g01148 | Cmo-Chr7:6157067 | Cmo07g01150 | Cmo-Chr7:6175157 | 0 | dispersed | |
| Cmo07g01148 | Cmo-Chr7:6157067 | Cmo07g01149 | Cmo-Chr7:6170474 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g01148 | K21777 | - | csv:101217210 | 717.998 |