Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01190 ATGGCGACCAATTTCTGGTCGTTAACATGCACTTGGTTTCAGAACAATAGTAATCTGTTGCCGCGGCCTCATTATCCGTCCATGCCCAAATATCCGGCGGGGATTTCGCTACCGGAGAATAGGTTGCCGACGAATGAGTCGACGGCGTTCTTCTCCGTCACTGGAATGACATGCTCTGCTTGTGCTGGCTCCGTCGAGAAGGCGATCAAACGGCTCCCTGGGATTCGTGAAGCCGTCGTTGATGTTTTGAATGCTAAAGCTCGAGTCCAGTTTTACCCTAGCTTCATTAATTTGGATCGAATATGTGAGGCAATTAACGATGTAGGCTTTGAAGCAAGTATAGTCAATGACGATATGATTGAAAGATGTCGAATTCATATAATTGGAATGACTTGCACTTCTTGCTCCAAAACTTTGGAATCTACAATACAAGCAATTCGTGGAGTTCAAAACGCCCAAGTTGCATTAGCCACGGAAGAAGCAGAAGTTTGTTTCGATCCAAGAATTTTGAACTACAATCAACTTCTCCAAGCCATTGAAGAATCTGGATTCGAAGCTTTACTTATTAGCACAGAAGAAGATGTAAGCAAGATACAGCTCCAAGTTGATGGAGTGAGATCTGAGAATTCAATGAGAGTGATTGGGAGCTCTCTGGAAGCACTTCCTGGAGTTCTAGGTATTAATATTGACCCTGCACTCAGCAAACTTTCATTGTCTTACAAGCCAAATGTCACCGGACCTCGGAATATAATCCAAGTGATTGAATCAACTGGATCTGGTCGTTTTAAGGCAACAATATTCCCTGAAGAACAGGGCAGAGAAGCCTATAAAAAGGAGGAAATTAAGCAATATTACCGATCATTCTTATGGAGTCTGATATTTACAATTCCAGTGTTTTTAAGCTCTATGGTCTTCACTTATATACCTGGTATTAAGGATGTGCTAGATGCCAAAATTGTCAATATGATGACTGTTGGGGAGCTGCTGAGGTGGGTGTTATCATCTCCCGTACAGTTCATTATTGGAAGGCGGTTCTATACAGGGTCTTACAAAGCATTGCGTCATGGTTCTGCTAATATGGATGTTTTGATTGGTTTGGGGACTAATGCAGCATACTTTTATTCAGTCTACATGGTATTAAGATCTGCAACCTCAAGTGATTTTAAGGCCACAGACTTCTTTGAGACCAGTTCAATGCTTATATCATTCATCCTTCTCGGGAAATATCTTGAGGTCTTGGCTAAGGGAAAAACATCAGAGGCTATTGTGAAGCTTATGAAGTTGGTGCCTGAAACAGCAACCTTGCTTACTTTTGATAATGATGGAAACGTCATTAGGAAAGAAGAAATTGATAGTCGGTTGATACAAAAGAATGATGTAATTAAAGTCATTCCAGGGGCAAAGGTTGCTTCCGATGGAGTTGTTGTTTGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAGAGAACGGATGATACGGTGATTGGAGGCACCTTGAATGAGAATGGTGTACTACATGTGAGGGCAACACACGTTGGATCTGAAAGCGCCCTTTCACAGATCGTGCGACTTGTTGAATCGGCTCAGATGGCCAAAGCTCCGGTTCAGAAAATTGCAGATCGCATCTCTAAGTTTTTTGTGCCAATGGTTATAGTCCTTTCATTGACAACATGGCTCGTCTGGTTTCTTACTGGGAAGTATGGTGGCTACCCAAAGTCCTGGATACCTTCTTCCATGGATAGCTGTGAGCTTGCTCTCCAGTTTGGCATTTCAGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACTGCAGTCATGGTTGCAACAGGAGTTGGAGCCTCAAAAGGTGTTTTAATTAAAGGTGGCCAAGCATTAGAGAGTGCTCACAAGGTGAATTGCATTGTGTTCGACAAAACTGGAACTCTTACAGTCGGGAAGCCAGTTGTGGTGAACACAAAGCTACTAAAAAATATGGTTCTGAAAGAATTCTATGAACTAGTTGCCGCAACTGAGGTCGACTTGGTAAACAGCGAGCATCCATTGGCCAAAGCCATTGTTGAATATGCTAAAAAGTTCAAAGAAGAGGACAACAATCAAACATGGCCTGAAGCACTAGATTTTATTTCCATTACTGGACATGGAGTAAAGGCCATCGTTCAAAACAAAGAAGTAGTTGCAGGCAACAAGAGTCTTATGTTAGATCAGAACATTTTCATACCCCTTGAAGCTGAAGAAATATTAAAAGAAATCGAAGAAATGGCTCAAACTGGAATTTTGGTATCCATTGATCGGAAATTGACCGGGGTTCTTGCCATATCTGATGCACTGAAACCAAGTGCTCGCGATGTCATTTCCATACTCGAAGCCATGAAAGTTAAATCCATCATGGTGACAGGTGATAATTGGGGGACAGCGAAGTCCATAGCCAATGAGGTTGGGATTGATGACATAATTGCAGTAGCTAAACCCGACATGAAAGCTGAGGAAGTGAAGAGACTACAGTCTTTGGGTCATACGGTGGCAATGGTAGGAGACGGGATCAACGACTCGCCAGCGCTTGTGGCTGCAGATGTCGGAATGGCCATTGGTGCAGGCACAGACATTGCAATTGAGGCAGCTGACATAGTCTTGATGAAAAGCAACTTGGAGGATGTCATAACCGCCATCGACCTTTCAAGAAAAACATTCTCCAGGATCCGTCTGAACTACATTTGGGCACTTGGTTACAATCTCCTCAGCATCCCTATCGCAGCCGGAGTCCTTTTCCCGTCGACTCAGTTTCGGCTACCACCATGGATTGCAGGAGCAGCAATGGCAGCCTCTTCTGTTAGTGTTGTTTGTAGTTCTCTCCAGCTCAAGTATTACAAAAGGCCCAAGAAGCTTGATACCCTTGAGATACAAGGCATTAGAGTTGTGTGA 2955 43.55 MATNFWSLTCTWFQNNSNLLPRPHYPSMPKYPAGISLPENRLPTNESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVDVLNAKARVQFYPSFINLDRICEAINDVGFEASIVNDDMIERCRIHIIGMTCTSCSKTLESTIQAIRGVQNAQVALATEEAEVCFDPRILNYNQLLQAIEESGFEALLISTEEDVSKIQLQVDGVRSENSMRVIGSSLEALPGVLGINIDPALSKLSLSYKPNVTGPRNIIQVIESTGSGRFKATIFPEEQGREAYKKEEIKQYYRSFLWSLIFTIPVFLSSMVFTYIPGIKDVLDAKIVNMMTVGELLRWVLSSPVQFIIGRRFYTGSYKALRHGSANMDVLIGLGTNAAYFYSVYMVLRSATSSDFKATDFFETSSMLISFILLGKYLEVLAKGKTSEAIVKLMKLVPETATLLTFDNDGNVIRKEEIDSRLIQKNDVIKVIPGAKVASDGVVVWGQSHVNESMITGEAKPVAKRTDDTVIGGTLNENGVLHVRATHVGSESALSQIVRLVESAQMAKAPVQKIADRISKFFVPMVIVLSLTTWLVWFLTGKYGGYPKSWIPSSMDSCELALQFGISVMVIACPCALGLATPTAVMVATGVGASKGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTKLLKNMVLKEFYELVAATEVDLVNSEHPLAKAIVEYAKKFKEEDNNQTWPEALDFISITGHGVKAIVQNKEVVAGNKSLMLDQNIFIPLEAEEILKEIEEMAQTGILVSIDRKLTGVLAISDALKPSARDVISILEAMKVKSIMVTGDNWGTAKSIANEVGIDDIIAVAKPDMKAEEVKRLQSLGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLSIPIAAGVLFPSTQFRLPPWIAGAAMAASSVSVVCSSLQLKYYKRPKKLDTLEIQGIRVV 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6446516 6452467 - CmoCh07G011900.1 Cmo07g01190 386498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01190 984 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 360 964 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo07g01190 984 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Cmo07g01190 984 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Cmo07g01190 984 Gene3D - 654 735 IPR023299 GO:0000166
Cmo07g01190 984 Gene3D - 736 786 IPR023299 GO:0000166
Cmo07g01190 984 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Cmo07g01190 984 Gene3D - 120 193 - -
Cmo07g01190 984 Pfam haloacid dehalogenase-like hydrolase 643 869 - -
Cmo07g01190 984 SUPERFAMILY HMA, heavy metal-associated domain 43 117 IPR036163 GO:0046872
Cmo07g01190 984 SFLD p-type atpase 629 907 IPR044492 -
Cmo07g01190 984 PANTHER ATP7, ISOFORM B 1 975 - -
Cmo07g01190 984 CDD HMA 51 113 IPR006121 GO:0046872
Cmo07g01190 984 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Cmo07g01190 984 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Cmo07g01190 984 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Cmo07g01190 984 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Cmo07g01190 984 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 975 - -
Cmo07g01190 984 CDD HMA 199 265 IPR006121 GO:0046872
Cmo07g01190 984 SUPERFAMILY HMA, heavy metal-associated domain 121 194 IPR036163 GO:0046872
Cmo07g01190 984 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Cmo07g01190 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 395 929 IPR023298 -
Cmo07g01190 984 Gene3D - 43 115 - -
Cmo07g01190 984 Gene3D - 196 258 - -
Cmo07g01190 984 CDD HMA 127 186 IPR006121 GO:0046872
Cmo07g01190 984 Gene3D - 614 912 IPR023214 -
Cmo07g01190 984 SUPERFAMILY Calcium ATPase, transduction domain A 448 533 IPR008250 -
Cmo07g01190 984 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Cmo07g01190 984 Gene3D - 415 537 - -
Cmo07g01190 984 PRINTS P-type cation-transporting ATPase superfamily signature 780 791 - -
Cmo07g01190 984 PRINTS P-type cation-transporting ATPase superfamily signature 802 812 - -
Cmo07g01190 984 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Cmo07g01190 984 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
Cmo07g01190 984 PRINTS P-type cation-transporting ATPase superfamily signature 878 890 - -
Cmo07g01190 984 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Cmo07g01190 984 Pfam E1-E2 ATPase 428 626 - -
Cmo07g01190 984 ProSiteProfiles Heavy-metal-associated domain profile. 197 258 IPR006121 GO:0046872
Cmo07g01190 984 SFLD Haloacid Dehalogenase 629 907 - -
Cmo07g01190 984 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 400 939 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g01190 984 CDD P-type_ATPase_Cu-like 286 951 - -
Cmo07g01190 984 SUPERFAMILY HMA, heavy metal-associated domain 193 259 IPR036163 GO:0046872
Cmo07g01190 984 SUPERFAMILY HAD-like 646 961 IPR036412 -
Cmo07g01190 984 TIGRFAM TIGR00003: copper ion binding protein 125 186 IPR006122 GO:0005507
Cmo07g01190 984 TIGRFAM TIGR00003: copper ion binding protein 51 112 IPR006122 GO:0005507
Cmo07g01190 984 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Cmo07g01190 984 Pfam Heavy-metal-associated domain 51 110 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01497 Cmo-Chr2:8752694 Cmo07g01190 Cmo-Chr7:6446516 0 dispersed
Cmo03g01486 Cmo-Chr3:10644182 Cmo07g01190 Cmo-Chr7:6446516 1.33E-12 dispersed
Cmo07g00032 Cmo-Chr7:204486 Cmo07g01190 Cmo-Chr7:6446516 4.22E-16 dispersed
Cmo07g01190 Cmo-Chr7:6446516 Cmo09g00365 Cmo-Chr9:1585811 7.06E-107 dispersed
Cmo03g00234 Cmo-Chr3:3602692 Cmo07g01190 Cmo-Chr7:6446516 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01190 K17686 - csv:101218801 1730.3