Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01220 ATGAACGACTTGATGACTCAATCGTTCACGAGCTATGTGGATCTAAAGAAGGCCGCTATGAAAGATATCGACCTCGAAGCCGGTCTTGAAACGGTGTCGTCTGATACCGACAATGGCGATATGGGGCTCTTCCTCGAAGAGGCTGAGAAGGTGAAATTGGAGATGGGTTCCATTAGAGAGATTCTTGGAAAGCTCCAGCAGGCCAATGAGGAGACGAAATCTGCTCATAAACCCGAAACTTTGAAATCGCTTCGCCAGACGATTAATGGCGACATCGTTACCGTCCTGAAGAAGGCTCGATCGATCCGTTCCAAGCTTGAGGAAATGGACCGTGCTAATGATGCTAAGAAGCGGCTCTCTGCTAGCAAAGAAGGAACTGCCATATACAGGACTCGTATCGCGGTGACAAACGGCCTGCGAAAGAAGCTAAAGGAGCTAATGATGGAGTTTCAAACCCTAAGACAAAGGATGATGACGGAGCACAAAGAGACAGTGGAGCGACGATACTTCACGGTGACGGGGGAGCACCCGGAGGAGGAGGTGATAGAGAAGATAATATCGAACGGAGGCGAGGAGTTTTTGGGGAGGGCAATAGAGGAGCACGGGCGGGGGAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGACACGGGGCGGCAAAGGAGATCGAGAGAAGCTTGCTAGAGTTGCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAAGCACAAGGGGAGAAAATGGATGACATTGAACACCATGTGATGAATGCTTCACAATATGTAAGAGATGGGAGTAAGGATTTGAAGAGTGCAAAGGATTTGCAAAGGAGCAATAGGAAATGGATGTGCTTCGGGGTTTTGCTTTTGCTCATTATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGGAGTTCTTGA 927 48.76 MNDLMTQSFTSYVDLKKAAMKDIDLEAGLETVSSDTDNGDMGLFLEEAEKVKLEMGSIREILGKLQQANEETKSAHKPETLKSLRQTINGDIVTVLKKARSIRSKLEEMDRANDAKKRLSASKEGTAIYRTRIAVTNGLRKKLKELMMEFQTLRQRMMTEHKETVERRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGSKDLKSAKDLQRSNRKWMCFGVLLLLIIILVVVIPIAVSFGSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6644227 6645777 - CmoCh07G012200.1 Cmo07g01220 386528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01220 308 SMART tSNARE_6 205 272 IPR000727 -
Cmo07g01220 308 SUPERFAMILY t-snare proteins 40 265 IPR010989 GO:0016020|GO:0016192
Cmo07g01220 308 PANTHER SYNTAXIN 4 301 IPR045242 -
Cmo07g01220 308 Coils Coil 102 122 - -
Cmo07g01220 308 Pfam SNARE domain 247 298 IPR000727 -
Cmo07g01220 308 Pfam Syntaxin 44 245 IPR006011 GO:0016020
Cmo07g01220 308 CDD SNARE_syntaxin1-like 209 270 - -
Cmo07g01220 308 Gene3D - 205 306 - -
Cmo07g01220 308 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 301 - -
Cmo07g01220 308 Coils Coil 136 156 - -
Cmo07g01220 308 Gene3D - 41 168 - -
Cmo07g01220 308 SMART SynN_4 36 162 IPR006011 GO:0016020
Cmo07g01220 308 CDD SynN 41 197 IPR006011 GO:0016020
Cmo07g01220 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo07g01220 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00262 Cmo07g01220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01220 Cmo-Chr7:6644227 Cmo13g00695 Cmo-Chr13:7115501 3.78E-101 dispersed
Cmo03g00262 Cmo-Chr3:3914507 Cmo07g01220 Cmo-Chr7:6644227 1.47E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01220 K08486 - csv:101220775 521.161