Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01224 ATGGCAGAAGTTGATCCTCCTCCCTTCTTCCTTTGTCCCATCTCTTTGCAAATTATGAAAGATCCCGTCACGGTCGCCTCCGGCATAACCTACGATCGGGAGAACATCGAGAGATGGCTGTTTTCCGATAAACATACGACGTGTCCGGTCACGCAGGTGGTCTTGTCGGACTTTGATATCACCCCCAATAATACTCTCTCCCGGTTGATTCAAGCTTGGTGCACTGTCAACAACAGGGTGGAGAGGATTCCGACACCAAAGCCTCCAGTCGACAAGAAGCAAGTTGTCAAGATTCTTGCAGACGTGAAGTTGTCTCCTTTCTCTCAACAGAATTGTTTGCGACGACTCGAGTCCATCGCATCGGCAAATGAGATGAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGTTGGAGTCGTGTATTTCGCGTTTGACGATCCGTTAGCGAATTTGGGCGATGAGGCTTTAAGCATTCTTTACAAACTTCAAATCTCTGAATCCGGCCTCAAGTTTCTTCTCGCCAACAATGGCGGCATCTTCGTCACAACCCTAACAAAATTCTTACAAAACGGCACTTATGGCTCCCGAGCGTATGCCACAATGCTTCTTCAATCGATGTTCGAAGTCGCCGATGAGATTCAGATTCGCAGTCTAAATCTTGAATTCTTCGTCGAAATCGTCCAAATTCTTAAGGATCAGATCTCGAAACAGGCCTCCAAATCGGCATTGAAATTGCTAATCGGACTCTGTTCGAGTTTCAGAAACAGAGTAAATGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTGGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGCGCTTGATCTGCTCTGCGGCTGTGCTGACGGCAGAGCGGAGCTATTGAACCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTCTCAGAGTTTCGTCGCTTGGAAGCGAGAAGGCCGTCGGAATTTTGTGCTCTATTGCGAGATTCTCGGCGAGCCAATCCGTCGTTCAGGAAATGGCGCGGCTCGGAGTTGTGGTGAAGCTCTGTTTTCTGCTTCAAGTCGTCGGCGCCGGAGCGAAAGCGAAAGAGAAGGCGAAAGAGATTCTAAAGCTTCATGGTCGAACATGGCGGAATTCTTCATGTTTTCCTTCGAGTTTGCGACCTTCTTATCCATTTTAG 1215 49.3 MAEVDPPPFFLCPISLQIMKDPVTVASGITYDRENIERWLFSDKHTTCPVTQVVLSDFDITPNNTLSRLIQAWCTVNNRVERIPTPKPPVDKKQVVKILADVKLSPFSQQNCLRRLESIASANEMNKRCMEAAGAVEFLVGVVYFAFDDPLANLGDEALSILYKLQISESGLKFLLANNGGIFVTTLTKFLQNGTYGSRAYATMLLQSMFEVADEIQIRSLNLEFFVEIVQILKDQISKQASKSALKLLIGLCSSFRNRVNAVQAGAVPVLIDLLLDLDSSEKRLCEMILVALDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILCSIARFSASQSVVQEMARLGVVVKLCFLLQVVGAGAKAKEKAKEILKLHGRTWRNSSCFPSSLRPSYPF 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6671103 6672814 - CmoCh07G012240.1 Cmo07g01224 386532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01224 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Cmo07g01224 404 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Cmo07g01224 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 404 - -
Cmo07g01224 404 SUPERFAMILY RING/U-box 3 78 - -
Cmo07g01224 404 Pfam U-box domain 7 77 IPR003613 GO:0004842|GO:0016567
Cmo07g01224 404 SUPERFAMILY ARM repeat 96 364 IPR016024 -
Cmo07g01224 404 CDD RING-Ubox_PUB 10 52 IPR045210 -
Cmo07g01224 404 Gene3D - 90 385 IPR011989 -
Cmo07g01224 404 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Cmo07g01224 404 PANTHER WDSAM1 PROTEIN 1 404 IPR045185 GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00526 Cmo-Chr6:2541838 Cmo07g01224 Cmo-Chr7:6671103 3.14E-141 dispersed
Cmo07g01224 Cmo-Chr7:6671103 Cmo20g00163 Cmo-Chr20:820835 6.79E-139 dispersed
Cmo03g00273 Cmo-Chr3:3990423 Cmo07g01224 Cmo-Chr7:6671103 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01224 - - cmo:103485961 595.119