Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01227 ATGGCGACTTACGCTTTGCTTGGCGACTCCGCTGTCCGCATTAATGGCGGTTTCGATGACGGTTCTCTGACCAGCAACTCGACGAACAGCAACGGCAGCGAAGAACTTAATCAACAGATTGTTCAAGTTCCTGTTCAGGTTTCTCAACCGCCGCCGCGATTACCGCCTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATAGAGATCGAAGAACTCGACGGCGGAGGCGGCGGTACCGCCGCCGTTCATCCACGGTTTTGTCGGCGGAGTTTGGCTTCCGATCGTCCTTTTGCAGGTGGAGAAAATAAGACGAATGAGAATGTGGATAACTATTGTTCTTCTTCAAACCCTAGCCATGGCGCTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTGGTCGCAGGGTCAAATTTATCAAATCCTCCGTCTGGTTCTGATGCTACGGCTTCTTCCACTACCTCCAATGTCTCGTCTCTTATTGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCATCGCCATTTGCAGAATCCTGCAGTCTGTGGGTTTTCTGGATTACCCTTGTTCCCACCCGAATCGAATCACCACCACCACCACAACAAGTTAAATACTCGCAATAATCCTTTCCCCATTCCTAATCCATGTCAGGTTGTTCTTCATAATCCTCCAACTTCTACAACGACCTCCATTATCGCCGCCGCTTCTACTCCAATGGATGATTCCTCCGCCACTGCTTGGATCGACGGTATTATCAAGGATTTAATCCACAGCTCCACTGCCGTATCCATTCCTCAGCTTATTCAGAACGTTCGTGATATTATCTACCCTTGTAACCCCAATCTTGCGAACCTTCTTGAGTTTCGTCTTCGTACTTTGACAGAACCTAACGTTCCTAACTTCGCCGCTGAGGATCAGCGTGTTAGGAAATCGCCCTTGCCGTCACCAGCGCCGGTGGGCGGCTTGGGGCTGCAGCAGAGGCAGTTCAATCAAGAACAGGATTGTTCTGGGTTGAAGCTTAATCTCGATTCTTCTCTGCATAATCTTCCTAATTTCTCCTCTCAGCCTCCGTTTCATGACCCATACCTCCACTGGGGAGCCACTCCTACCCCAGCCCCCACTCCCTCCGTCGCCACCACCGGCGGCGAGGTTCCCGGTCATCAACTTAATCTCTCTTCTGTTCCACATTCATCACTTATTCCTCTAAACCATATCCCTTCTAAGCCACAGCCAGAACAGCAAAACTCCTGTCCGGTCAATGTGAAGGCAGCGGTGGCGGCGGCCGCACAGCCATCTCCCTCGCCGCCGACGAGTAATGATCCTTCAACGACTGCGTTACTGATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACATCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCCGTTTCTGCCGATAATTTAGAAGAAGCCAATAAGATGCTACTGGAAATCTCGGAGTTGTCGACGCCCTTCGGCACATCGGCGCAAAGAGTGGCGGCGTATTTCTCAGAAGCAATGTCGGCGAGGCTTGTGAGTTCATGTTTAGGCATATACGCCGCTTTGCCGCCGACGTTATTGCCCCATACACACAGCCAGAAGATAGCCTCAGCCTTTCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATTCAAGAAGCCTTCGAAAGGGAAGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGTCTTCAATGGCCAGGCCTCTTCCACATCTTGGCGTCTCGGCCGGGTGGGCCGCCCTATGTCCGCCTCACTGGGCTGGGGACCTCTCAGGAAGTTCTTGAGGCCACTGGCAAACGCCTCACTGAATTCGCCGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCTGTTGCAGATAAAATTGGCAATCTGGACTTGGAGAGGCTCAACGTGAGCCAGAGGGAAGCCGTTGCCGTCCATTGGATGCAGCATTCTCTTTACGAAGTCACTGGTTCTGATTCCAATACGCTCTGGCTTCTGCAGAGATTGGCTCCAAAAGTGGTGACGGTGGTCGAACAAGATCTGAGCCACACAGGCTCCTTCTTGGGAAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTTGACTCTTTGGGTGTCAGCTATGGCGAAGAGAGTGAAGAGAGGCACTTAGTGGAGCAGCTACTGTTATCAAGGGAGATCAGAAACGTGCTGGCCGTCGGAGGACCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAACAATCTGGGTTTAAGGGCATTTCTCTGGCCGGTAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGATATACGCTTGTGGAAGACAATGGGACTTTGAAACTTGGGTGGAAGGATCTATGCTTGCTGACAGCGTCAGCTTGGAAGCCGCCGTTTCATCACCATGCTGCGGGCAACCACATTCCTAGGTACTGA 2544 50.9 MATYALLGDSAVRINGGFDDGSLTSNSTNSNGSEELNQQIVQVPVQVSQPPPRLPPGKMVRKRIASEIEIEELDGGGGGTAAVHPRFCRRSLASDRPFAGGENKTNENVDNYCSSSNPSHGANHSTVHNLTALTSVVVAGSNLSNPPSGSDATASSTTSNVSSLIDSTLPVLRPQPHHRHLQNPAVCGFSGLPLFPPESNHHHHHNKLNTRNNPFPIPNPCQVVLHNPPTSTTTSIIAAASTPMDDSSATAWIDGIIKDLIHSSTAVSIPQLIQNVRDIIYPCNPNLANLLEFRLRTLTEPNVPNFAAEDQRVRKSPLPSPAPVGGLGLQQRQFNQEQDCSGLKLNLDSSLHNLPNFSSQPPFHDPYLHWGATPTPAPTPSVATTGGEVPGHQLNLSSVPHSSLIPLNHIPSKPQPEQQNSCPVNVKAAVAAAAQPSPSPPTSNDPSTTALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPTLLPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSQREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQLLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAGNHIPRY 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6689035 6692665 - CmoCh07G012270.1 Cmo07g01227 386535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01227 847 ProSiteProfiles GRAS family profile. 463 832 IPR005202 -
Cmo07g01227 847 MobiDBLite consensus disorder prediction 95 125 - -
Cmo07g01227 847 MobiDBLite consensus disorder prediction 308 328 - -
Cmo07g01227 847 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 155 834 IPR005202 -
Cmo07g01227 847 PANTHER PROTEIN SCARECROW 155 834 - -
Cmo07g01227 847 MobiDBLite consensus disorder prediction 377 396 - -
Cmo07g01227 847 MobiDBLite consensus disorder prediction 104 125 - -
Cmo07g01227 847 Pfam GRAS domain family 473 832 IPR005202 -
Cmo07g01227 847 MobiDBLite consensus disorder prediction 142 161 - -
Cmo07g01227 847 MobiDBLite consensus disorder prediction 372 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00275 Cmo07g01227 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01227 Cmo-Chr7:6689035 Cmo04g02397 Cmo-Chr4:17862439 1.08E-68 dispersed
Cmo04g00661 Cmo-Chr4:3290743 Cmo07g01227 Cmo-Chr7:6689035 9.21E-161 transposed
Cmo07g00810 Cmo-Chr7:3736085 Cmo07g01227 Cmo-Chr7:6689035 3.61E-36 transposed
Cmo08g00257 Cmo-Chr8:1595233 Cmo07g01227 Cmo-Chr7:6689035 2.26E-108 transposed
Cmo15g00706 Cmo-Chr15:3434662 Cmo07g01227 Cmo-Chr7:6689035 1.52E-46 transposed
Cmo03g00275 Cmo-Chr3:4017235 Cmo07g01227 Cmo-Chr7:6689035 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10179 PF03514 GRAS 1.60E-126 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01227 - - bhj:120074183 1363.98