Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g01231 | ATGGGGAGTTCTGGATTCTCGTGGAAGTTGCCGGATCATCCTAAGCTTCCTAAGGATAAGACGGTAGCTCTTATTGTTTTGGATGGGTGGGGCGAAGCTGATCCTGATCGCTATAACTGTATCCATGTCGCCGAAACTCCCACCATGGATTCCCTTAAGAAGGGCGCCCCTGAGAGATGGAGGCTGATCAGGGCACATGGAAAGGCAGTAGGACTTCCTACAGAAGATGACATGGGCAACAGCGAGGTCGGACATAACGCGCTTGGTGCTGGACGTATCTATGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTTGCCTCTGGAAAAATATACGACGGAGAAGGTTTCAAATACATCAAGCAATCCTTTGAAACCGGCACATTGCATCTTATAGGATTATTGAGTGATGGTGGAGTGCACTCTAGGATAGATCAGTTACAGTTATTACTCAAAGGAGCAAGTGAGAATGGAGCTAAAAGAATCCGTGTCCATATACTTACTGATGGGCGTGATGTTTTGGATGGTTCGAGTGTGGGCTTTGTAGAAACTCTTGAAAATGACCTTGCCAAACTACGTGAGAGTGGGGTCGATGCACAAATCGCATCTGGTGGAGGCCGTATGTATGTGACAATGGATCGATATGAGAATGATTGGGAAGTTGTGAAGCGAGGATGGGACGCACAAGTACTTGGCGAAGCACCATACAAGTTCAGAAGTGCCGTTGAAGCTGTCAAGAAATTGAGAGAGGAAACCAAAGCAAGTGATCAGTATCTTCCTCCATTTGTCATAGTTGATGATAGCGGGAAGTCTGTGGGCCCAATTGTGGATGGAGATGCAGTAGTCACCTTTAATTTTAGAGCAGATCGGATGGTTATGATCGCCAAGGCCCTCGAATATGAAGATTTTGATAAATTTGACCGAGTTAGGGTCCCTAAAATTCGTTATGCTGGAATGCTTCAGTATGATGGTGAGTTGAAGCTTCCAAGCCATTACCTTGTCTCCCCCCCAGAGATTGAGAGAACATCTGGGGAATATCTTGTGCACAATGGTGTTCGGACCTTTGCTTGCAGTGAGACCGTCAAGTTTGGCCATGTTACATTCTTCTGGAATGGAAACCGTTCTGGATATTTTAACCCAGAAATGGAGGAATATGTGGAGATTCCTAGTGATTCTGGGATCACCTTTAATGTTAAGCCAAAGATGAAGGCCATAGAGATTGCTGAGAAGGCACGAGATGCTATTCTTAGCCGAAAATTCCATCAGGTACGTGTTAACCTGCCGAACGGTGACATGGTCGGACACACTGGTGATATTGAGGCCACAGTTGTAGCTTGCAAGGCTGCTGATGATGCCGTAAAAATTATCCTCGACGCAATCGAACAAGTAGGGGGAATATACGTTGTCACTGCAGATCACGGAAATGCAGAGGACATGGTGAAGAGAAACAAGTCGGGGCAGCCTCTTCTTGACAAAAATGGCAAAATTCAAATCCTGACCTCTCACACTCTTCAGCCAGTTCCTATTGCAATTGGAGGTCCGGGACTGGCCCCTGGAGTCCGATTCCGTAAGGATGTTCCTGATGGAGGGCTTGCCAATGTTGCTGCAACTGTTATCAATTTCCATGGGTATGAAGCTCCAAGCGACTACGAGACAACCCTAATTGAAAAAGTCGGATATGATCTTAGTTCATCTTCGATCACTCGGGCTGGTGCAGGGAATCTTGGCAAAGATTCTGCGGCGGTGACCGGCGGCCTGGTGAAGCAGCGTGAGCAACGCGCGGGGCAGTGGTGGACGGCGGCTCTTCCTCACAGGTTGGCAAGCAACGGCGTCCCGCGTCAATGTGGCTCGTCCGGCAGCGAGCACGAAGAAGAAGAAGAAGAAGAATCGGAATCTTCAGCTGCCATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGAGAAGGAACTTACGGGAAGGTGTACAAGGCCAAAGATAAGGAAACTGGCCAACTTGTTGCTCTGAAGAAAACTCGCCTTGAAATGGACGAAGAAGGAGTTCCACCGACGGCGCTTCGTGAGGTTTCTCTTCTCCAATTGCTCTCTCAGTCTCTCTATGTTGTTCGTCTTCTCTGCGTTGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTTGAGTATCTGGATACTGATCTCAAGAAGTACATCGATTCGCATCGCAAGGGACCCAACCCTAGGCCTCTTCCTTCTTCCCTTGTTCAGAGTTTCTTGTTTCAACTCTGTAAGGGTGTTGCGCATTGTCATAGTCATGGCGTTCTCCATCGTGACCTGAAACCGCAGAATCTTCTTCTGGATCAGGGTAAGGGTATTCTGAAGATTGCCGATCTTGGCCTTGGCCGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAGATTGTTACTCTCTGGTACCGTGCTCCTGAGGTTCTCCTTGGATCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGCTGAAATGGTGAGAAGGCAGGCCCTGTTCCCCGGAGATTCTGAGTTTCAGCAGTTGCTCCACATTTTTAGGCTTCTAGGTACCCCCACCGAGAAACAGTGGCCTGGAGTTAGTTCTTTGCGGGACTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCCTGGAACCCGAGGGTGCTGACCTTCTCTCGAAAATGCTTACATATAATCCGGCAGATAGAATCTCAGCGAAGGCAGCTCTAGAGCATCCGTACTTTGACAGCCTCGACAAGTCTCAGTATTAG | 2820 | 48.19 | MGSSGFSWKLPDHPKLPKDKTVALIVLDGWGEADPDRYNCIHVAETPTMDSLKKGAPERWRLIRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYDGEGFKYIKQSFETGTLHLIGLLSDGGVHSRIDQLQLLLKGASENGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAKLRESGVDAQIASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPYKFRSAVEAVKKLREETKASDQYLPPFVIVDDSGKSVGPIVDGDAVVTFNFRADRMVMIAKALEYEDFDKFDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDSGITFNVKPKMKAIEIAEKARDAILSRKFHQVRVNLPNGDMVGHTGDIEATVVACKAADDAVKIILDAIEQVGGIYVVTADHGNAEDMVKRNKSGQPLLDKNGKIQILTSHTLQPVPIAIGGPGLAPGVRFRKDVPDGGLANVAATVINFHGYEAPSDYETTLIEKVGYDLSSSSITRAGAGNLGKDSAAVTGGLVKQREQRAGQWWTAALPHRLASNGVPRQCGSSGSEHEEEEEEESESSAAMEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGADLLSKMLTYNPADRISAKAALEHPYFDSLDKSQY | 939 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6716325 | 6727299 | + | CmoCh07G012310.1 | Cmo07g01231 | 386539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g01231 | 939 | PANTHER | 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE | 1 | 557 | IPR005995 | GO:0004619|GO:0006007 | |
Cmo07g01231 | 939 | MobiDBLite | consensus disorder prediction | 607 | 635 | - | - | |
Cmo07g01231 | 939 | Pfam | BPG-independent PGAM N-terminus (iPGM_N) | 102 | 322 | IPR011258 | GO:0004619|GO:0005737|GO:0006007|GO:0030145 | |
Cmo07g01231 | 939 | TIGRFAM | pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) | 21 | 550 | IPR005995 | GO:0004619|GO:0006007 | |
Cmo07g01231 | 939 | Gene3D | Transferase(Phosphotransferase) domain 1 | 726 | 939 | - | - | |
Cmo07g01231 | 939 | Pfam | Protein kinase domain | 638 | 931 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo07g01231 | 939 | ProSitePatterns | Protein kinases ATP-binding region signature. | 644 | 667 | IPR017441 | GO:0005524 | |
Cmo07g01231 | 939 | Gene3D | Alkaline Phosphatase, subunit A | 22 | 546 | IPR017850 | - | |
Cmo07g01231 | 939 | SUPERFAMILY | Alkaline phosphatase-like | 20 | 548 | IPR017850 | - | |
Cmo07g01231 | 939 | ProSiteProfiles | Protein kinase domain profile. | 638 | 931 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo07g01231 | 939 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 768 | 780 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo07g01231 | 939 | Coils | Coil | 621 | 644 | - | - | |
Cmo07g01231 | 939 | Gene3D | Phosphorylase Kinase; domain 1 | 621 | 725 | - | - | |
Cmo07g01231 | 939 | PANTHER | 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 2-RELATED | 1 | 557 | - | - | |
Cmo07g01231 | 939 | Pfam | Metalloenzyme superfamily | 20 | 544 | IPR006124 | GO:0003824|GO:0046872 | |
Cmo07g01231 | 939 | SUPERFAMILY | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain | 96 | 331 | IPR036646 | GO:0004619|GO:0005737 | |
Cmo07g01231 | 939 | CDD | iPGM | 20 | 554 | IPR005995 | GO:0004619|GO:0006007 | |
Cmo07g01231 | 939 | SUPERFAMILY | Protein kinase-like (PK-like) | 634 | 934 | IPR011009 | - | |
Cmo07g01231 | 939 | Gene3D | - | 96 | 340 | IPR036646 | GO:0004619|GO:0005737 | |
Cmo07g01231 | 939 | SMART | serkin_6 | 638 | 931 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00278 | Cmo07g01231 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01496 | Cmo-Chr4:7659026 | Cmo07g01231 | Cmo-Chr7:6716325 | 1.40E-112 | dispersed | |
Cmo07g01231 | Cmo-Chr7:6716325 | Cmo18g00940 | Cmo-Chr18:10556806 | 1.50E-114 | dispersed | |
Cmo01g02100 | Cmo-Chr1:14539206 | Cmo07g01231 | Cmo-Chr7:6716325 | 5.42E-144 | transposed | |
Cmo04g02106 | Cmo-Chr4:13382655 | Cmo07g01231 | Cmo-Chr7:6716325 | 8.17E-13 | transposed | |
Cmo03g00278 | Cmo-Chr3:4040654 | Cmo07g01231 | Cmo-Chr7:6716325 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74490 | PF01676 | Metalloenzyme | 4.10E-111 | CL0088 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g01231 | K15633 | - | csv:101217925 | 1041.18 |