Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01233 ATGGCTGGTCAATCAGATCCTCACCTGACCCTATTTTCTGCAGAAGAGATCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTGTTCCTAATATGAGAATGGATTCTCTAAATTTGATTTGTGGGGATTATGGTCCGTTCTATCCCCAAATCGCCACTGAAGTTCCATTGTGGCTAGCGATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGCCTCCAGAGTGGATGTCTGTTGGTAAGTTCTATCTGTTATATATGACCTACGTGAAGGATTCATCGTCAAGGAAACTCCATCTCCCAGAGAAAAACCAAATAAATTTTCGGCTTTCTGGACTAGAAAAGTTGACACAAACGTTGGAGGCAGAACGAGAGTCTCAAGGATCTTTCCAGATACTACCCTTCCATTACGTCGAAATATCGAAACTTCTTTTTGACCACGCACGAGAGGACGTTCCTGACATGTATTTGGTAAGGTCTCTTATTGAAGATATCAGGGATGTTCGGTTTCACAAAGTTGAAACCAGTTTGGAGTCGATTGATACACGCACATCCGCAGTGAAGATTAAAGATCTATCTGCCATGGAAGTGAATATAGTTCGACCGTTTGTCGGTAGAGCGCTGCAGGCAATTTACAAGCATGGAAATCCAGAGTTGGTCCCAGATCAAGAAAGAATGACCAATGTGCAGTCACAAGGACATGATCATGGGCAAAGGAGACCTCTTCGGAGACGCTTCCTCATCCCAAATCACAAACCAAGCTTCACAATGGCCTCTTCCAAGTACTTGATCATAGCTTTCATGGCTACTTTGATGTTTTCAGCCATCAATACTGGTCGAGCTGCTCGTCATCTCTTGCAAACTGCTCCACCGAACGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGCCGTTGCCAACGATGCCGAACCCAACAACAGGGCCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACATTGCCAACATTGCCAACTACTCAACCATCCCTCCCTAAGTTACCTCCACTTCCAAGCTTCCCTAGCAACATCCCGACTGGAATGGCGCTTCCTCCACTCCCGACAACTTTGCTTCCGAACCTACCATCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA 1155 46.75 MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRPPEWMSVGKFYLLYMTYVKDSSSRKLHLPEKNQINFRLSGLEKLTQTLEAERESQGSFQILPFHYVEISKLLFDHAREDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVGRALQAIYKHGNPELVPDQERMTNVQSQGHDHGQRRPLRRRFLIPNHKPSFTMASSKYLIIAFMATLMFSAINTGRAARHLLQTAPPNVPGLPSLPPLPPLPTMPNPTTGPGIPSIPSLPQPTLPTLPTTQPSLPKLPPLPSFPSNIPTGMALPPLPTTLLPNLPSIPSLTPPPTTTSSP 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6737183 6742858 + CmoCh07G012330.1 Cmo07g01233 386541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01233 384 Gene3D - 113 225 - -
Cmo07g01233 384 SUPERFAMILY PriA/YqbF domain 12 71 - -
Cmo07g01233 384 SUPERFAMILY GINS helical bundle-like 113 216 IPR036224 -
Cmo07g01233 384 MobiDBLite consensus disorder prediction 296 384 - -
Cmo07g01233 384 CDD GINS_A_psf2 66 216 - -
Cmo07g01233 384 Pfam GINS complex protein 53 196 IPR021151 -
Cmo07g01233 384 MobiDBLite consensus disorder prediction 296 355 - -
Cmo07g01233 384 MobiDBLite consensus disorder prediction 362 384 - -
Cmo07g01233 384 Gene3D - 12 77 - -
Cmo07g01233 384 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 1 231 IPR007257 GO:0005634|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01233 Cmo-Chr7:6737183 Cmo16g00292 Cmo-Chr16:1332174 2.65E-31 dispersed
Cmo07g01233 Cmo-Chr7:6737183 Cmo07g01234 Cmo-Chr7:6744224 7.28E-30 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01233 K10733 - csv:101212053 380.948