Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01235 ATGACGAGACAGAAAATTCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACTTTCTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTAGCCACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGCAAGCTATTTGACTATTCTAGCTCAAGCATGCAGGAGTTGCTGAGAAGACATAACATGATACCAGAGGTTAATAGCTTTGGTCAGCAGCCTCCATCTCAGGTTGAAAAGGATGCCTATGCTAAATTGAGTGAAGAATTTGCAGCCAAAACCAAAGAGCTTAAGCATATGAGGGGAGAGGATCTTCAAGATTTGGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTGGAGATTGGTTTGAATCGTGTTATAGAGACCAAGGATGACAAGTTTCTAAAAGAAATTGGTGCTGGAAAGGAAAAGGAAGCTTTGTTGATGAAAGAGAATCAGAGACTAAGGAATGGGATGGTAACTTTGAATCATAGGGAGCAAGAACAAGCAGTGATTGGTGGGAGCTCCTTGGGGTCAAAGTCAAACACTACCAATAGCAGCTCCTCACCAAACCCTAATTCTCATGATTTTGATGACATTTCTCTTAAATTGGGCATCTTGACAATGAAGTCAGGGTTCCCCAATGGAGCTTTACTGATCATCACTTGA 696 40.52 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMIPEVNSFGQQPPSQVEKDAYAKLSEEFAAKTKELKHMRGEDLQDLGIEELKQLEKLLEIGLNRVIETKDDKFLKEIGAGKEKEALLMKENQRLRNGMVTLNHREQEQAVIGGSSLGSKSNTTNSSSSPNPNSHDFDDISLKLGILTMKSGFPNGALLIIT 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6747714 6753651 + CmoCh07G012350.1 Cmo07g01235 386543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01235 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Cmo07g01235 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo07g01235 231 MobiDBLite consensus disorder prediction 181 204 - -
Cmo07g01235 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo07g01235 231 Pfam K-box region 85 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo07g01235 231 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cmo07g01235 231 Coils Coil 91 111 - -
Cmo07g01235 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo07g01235 231 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 213 - -
Cmo07g01235 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo07g01235 231 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo07g01235 231 Gene3D - 15 75 IPR036879 GO:0003677|GO:0046983
Cmo07g01235 231 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Cmo07g01235 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo07g01235 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo07g01235 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01235 Cmo-Chr7:6747714 Cmo12g00151 Cmo-Chr12:982096 9.18E-61 dispersed
Cmo07g01235 Cmo-Chr7:6747714 Cmo16g00296 Cmo-Chr16:1342335 4.11E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10180 PF01486 K-box 2.50E-15 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01235 - - csv:101223132 298.516