Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01242 ATGATACCTGACCTTTCTCCCCTTTCTATCTTCTTCCCTCTCTCTCGTCCTTCATACGCCTTCAATTTCCGCCATTTTTGCATTTCATCATCGCCATCGAAACCCCATCAAACCCTTTTCATCCATTTATCTAATCAAACCCTACCCCTCTCCCCTTCTTTCGGTGATTCGCCGATTTCTTTGACCTTTCAATCCGATCATCGCGACCCAAGATCCTCCACGGAGTCTCGTTTGCGGAGAAGGGTTAGGCCATTCACCCGAATGGAAGCGTCTGGTAGCGACCCCGATTCTCATAGAACTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCTAATATGATTCAGGCTCCGCTTTCCGCTCTGTTAGAGTATTCGGGTCTTCTTCGTGGCCGACCTAGTCATCAAGAATCCGAAGCATTGATAAGTGCACGATTACCTTCGGGATTGCGGGACCATCTTCGTAGTCAGATTGAAGAATCTTCTGGTGTCACTAACGACGGAGAGGTTTCGATTAGGATAATTGGAGCAGGGGAACAAGAACATGTTAGGGACAGTGCTGGACTAGTAGTTGGGCAAGTGAGGGAGGTCGGCGGTCAGAATTCAGCATCTTTGCAATCTGTTTCGGGGTTGGCATCATCAGAGTTTAGCCAGGGAGATGCTGCTACTGGACGAGGTGTGATAGAGGGTATTCCTCAACCGGTTAACGAAGGTCCTGATGGAGATGCATCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTACGATATTCAACAGGCTGCCCGGGGGATTGAGCAGATTCTTCCATTTAGTTTTCTTCTACTGGTAGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTACAAGTCTAATGATATATTGCGAAAACAAACAGCTTTGAAGGGAGAGAGGAAGATCTCTGTTTTGGTTGCCATTTCTCTTGCATTCACTTTCCATATTATTGGTGTGTACTGGTGGTATCAGAAGGACGATCTCTTATATCCGTTGATCATGCTTCCTCCCCGAGCAATACCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAAGCAGGGATGGTGGTCAAGTGTGTTTTATTGATGTATTACAAGAACAGTCGAGGCCGCAATTATCGTAAACAGGGACAAATGCTAACTTTAGTCGAATATCTGCTTCTACTGTACCGTGCATTGTTGCCTACTCCCGTCTGGTATCGTTTCTTTTTGAACAAAGAGTACGGAAGTTTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCATTGTCGCGTAAAGAGGTGCATTATGGGGCCTATGCAACATCGGAGCAGGTCAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCTTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGGACATGTCCATTGTGTAGGGCTTTGGTTAAGCCTGCGGATCTCAGGTCATTTGGGGATGGATCAACAAGTCTGTTTTTCCAGCTGCTGCCCTGGAGAGAGCGAAACCATCACTGCTTGCTGCTGCTCACAAGGTGTACTCGGAAAGGCGACCATAATGGTAGTCCTTTTTGTGCTACAGAGGAGGACGATCGACGTTCGACGTTCGAGAGGCGGAGGCGGAGGTGGATGAGTTTAAACATATATGTATATATATGCAAATTTGTATGA 1842 45.98 MIPDLSPLSIFFPLSRPSYAFNFRHFCISSSPSKPHQTLFIHLSNQTLPLSPSFGDSPISLTFQSDHRDPRSSTESRLRRRVRPFTRMEASGSDPDSHRTASTSGSSRRFGMLAASNMIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGLRDHLRSQIEESSGVTNDGEVSIRIIGAGEQEHVRDSAGLVVGQVREVGGQNSASLQSVSGLASSEFSQGDAATGRGVIEGIPQPVNEGPDGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVAISLAFTFHIIGVYWWYQKDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAGMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLLPWRERNHHCLLLLTRCTRKGDHNGSPFCATEEDDRRSTFERRRRRWMSLNIYVYICKFV 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6789457 6797011 - CmoCh07G012420.1 Cmo07g01242 386550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01242 613 CDD RING-HC_RNFT1_like 492 531 - -
Cmo07g01242 613 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 88 553 - -
Cmo07g01242 613 MobiDBLite consensus disorder prediction 231 258 - -
Cmo07g01242 613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 541 IPR013083 -
Cmo07g01242 613 Pfam Zinc finger, C3HC4 type (RING finger) 491 534 - -
Cmo07g01242 613 ProSiteProfiles Zinc finger RING-type profile. 493 531 IPR001841 -
Cmo07g01242 613 SUPERFAMILY RING/U-box 488 536 - -
Cmo07g01242 613 SMART ring_2 493 530 IPR001841 -
Cmo07g01242 613 MobiDBLite consensus disorder prediction 59 106 - -
Cmo07g01242 613 ProSitePatterns Zinc finger RING-type signature. 508 517 IPR017907 -
Cmo07g01242 613 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 88 553 IPR044235 GO:0061630|GO:1904294
Cmo07g01242 613 MobiDBLite consensus disorder prediction 68 87 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00286 Cmo07g01242 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00096 Cmo-Chr4:503942 Cmo07g01242 Cmo-Chr7:6789457 0 dispersed
Cmo04g01120 Cmo-Chr4:5713697 Cmo07g01242 Cmo-Chr7:6789457 0 dispersed
Cmo07g01242 Cmo-Chr7:6789457 Cmo16g00283 Cmo-Chr16:1272373 3.75E-10 dispersed
Cmo03g00286 Cmo-Chr3:4090919 Cmo07g01242 Cmo-Chr7:6789457 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01242 - K22379 csv:101205267 837.41