Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01248 ATGTTGCTGCTGTCAATGGGTGTGAAGGAAAAGCCAAAAATATTAGTAAATTGGAAGCGCCAACTAAACCTCCTCCACTCTGACCCCGGGATGCCTTCTTTCCCCTTTCACCATTTATACCCATTTCAATCTCACTCTCCTTCTTCTTCACCACATCCAATTCATTCATTCTTCTTCTTCTTGTTTCTTATTTGGGTTTCTCACGAACCCATTTCTTCCACCTCGCTCTGCTTCATTCTCCCACAGGTGTTCGTTTGTTTGCTTGTGATGCTGTTTCCTTCTGATGTTGCTGCATTGCTAGCAATAAAGAGGAGTCTAATTGATCCTATGGATAACCTTAAAAACTGGACTAAGGGAGATCCTTGCATCGTTGGTTGGACTGGAGTGGTATGCAACTCTACCAATGGAACTGTTGGGAACTTACGTGTCAAAGAACTCCATCTATTGAATCAGAACCTATCTGGAAACTTAGCCCCTGAGATCAGCCAATTGTCCCAACTTGAGAAGTTAGATTTCATGTGGAATGACTTAACTGGTTCAATTCCGAAGGAGATTGGCAGTCTTAGGTTCCTGAGACTATTACTCTTAAATGGAAATAAACTATCTGGTTCTCTTCCAGATGAGCTTGGTAATCTTACAAATCTCATCCGATTCCAAGTAGATGAGAATCAACTTTCAGGGCCTATCCCAAAATCATATGCTAACTTGACCAATCTGAAGCACATCCACTTCAATAACAACACACTCAGTGGTCAAATTCCATCTGAGCTTTCTACATTACCCAAGCTTATTCACTTGCTTTTGGATAACAATAAATTGTCGGGTTCTCTGCCACCGGAACTTTCGAGCTTGCCAGTTATAAGCATTCTGCAACTTGATAACAACAACTTGGAAGGAGAAATTCCAGCATCTTATGAAAATTTTTCTACATTAGTGAAATTAAGTCTTAGGAATTGCAACTTGGAGGGACAGATTCTTAACTTTAGCAAGAATGAAAACCTCAGTTACTTGGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCATATAACCTCTCTTCTCAAATGACAACGATAATTTTGTCACACAACCACCTGAATGGATCTATCCCCAGCAGTTTCTCCGGTCTTCCTGCCCTCCAGAAACTGTCACTTGAGAACAACTCTCTAAATGGCTCTGTACCTTCATCTCTATGGGAGAAAGTGGTCTTCAATTCGAGTGCTCGACTTTTACTTGATCTTCGGGACAATTCATTTTCTGGCATTTCCGGAAGCACGAACCCTCCAGTCAATGTCACTCTAAGGCTTGAAGGAAATCCATTCTGCCTAAATTTAAGAGGACAGAACTCTAAGTTGTTCTGTGCATCAAAAACTGTAGATGATGGGTTGTTTAGAAGCTCGAGCACCTTCAACGAATCATGTCCAGTCAGAGGTTGTCCAACAGATGTTTTTTTCGAATACGTGCCAGACTCCCCAGATCCATGCTTTTGTGCAGCACCCCTTGGGATAGGATATAGGCTAAAGAGTCCAAGTTTTTCCTACTTTCCTCCATACAAATATTCATTTCAAGAATATGTGACAAAGGAACTCACTTTGGATAAGTATCAATTGTCGATCGATTCATACGATTGGGAAGGATCTCGTATGAGGATGTATCTTAAGATTTTCCCATTATTTGATAGTGGTTCTCACTTGTTGAATGACAAAGAGGTGCTTCGAATTACAGAAAAATTTATGTCATGGAATTTTACTCGTAATGACCTCTTTGGCCCGTACGAGCTTCTCAACTTCACGTTCCCCGGCCATTCTCAGATCGTTACTTTGCATACAGAGAAGGTGGGGATTGGTACAGGCATCTTGGCTGCCATTATAGTTGGATCTGTCACCTGTGTTGTTTTGATTGTAGCAGTGGTCATACTTCTGTTCACTAGGCGTTCGAGTAGCCGTAACAATTTGTCAAGGAAAAACTTCTCTTCGGTGATCGGTATGAAGATTGATGGTGTAAAAGCATTTTCATTCAAAGAAATGCAATCAGCTACTGGATATTTCAACTGTTCATCTCAAGTAGGCCATGGAGGATATGGCAAGGTCTATAAAGGCATACTATCTGATAATTCAGTTGTCGCTATCAAACGTGCAGAAGAAGGATCGTTGCAAGGCCAAAAAGAATTCTTGACGGAGATACACCTCTTATCACGAGTTCATCACCGAAATCTAGTTTCGCTAATCGGATATTGTGATGAAGAAGGGGAGCAAATGCTGGTTTACGAGTTTATGTCGAACGGGACTTTGCGGGACTGGATTTCTGGTTGTGAATTTTCTGCCAAAACTGCAGTAAACCTGAACTTTCGTAGGAGGTTACAAATTGCATTGGGTTCAGCTAAAGGTATACTGTATCTCCATACTGAAGCAAATCCTCCTATATATCACCGAGACATAAAATCGAGAAACATCCTCCTCGACTCCAAGCTCACTGCCAAAGTGGCTGATTTCGGACTGTCACGTCTTGCTCCCGATCTCGACTATGAAGGGGACGCTTCTGGACATGTGTCTACTGTTGTGAAGGGTACCCCGGGTTACCTTGATCCGGAGTACTTTTTAACCCATAAATTGACCGACAAAAGCGATGTCTATAGCCTCGGCGTTGTGCTCTTGGAGCTCTTAACCGGAATGCATCCTATTTCTCACGGCAAAAACATCGTTCGTGAGGTAAAGCTGGCACATCAACTAGGAACAATGCTTTCAATTGTCGACACCAGGTTAGGTTCGGTCTCGGCCGAGTGTTTAGAGAGGTTTGCTGCATTGGCACTCAGTTGTTGCCATGACAAGCCAGAAGACCGGCCGTCTATGCGTGTTGTAGTGAGGGAGCTGGAGAACATACTGAACATGATGCATGATGATAGTGGCACCTTGTGTTCCAACTTGTCTCCGAGCTCGAGCACTGGACTTCCGTCCTCACCAACGTCGACATCAGCATCGGCATCATACATTGCCCGAGACCAATTTGCATCGGGAAGCATTTCGGGGAGCGATCTCATCAGTGGCGTTGAGCCAGCCATCAGACCTCGCTGA 3075 43.22 MLLLSMGVKEKPKILVNWKRQLNLLHSDPGMPSFPFHHLYPFQSHSPSSSPHPIHSFFFFLFLIWVSHEPISSTSLCFILPQVFVCLLVMLFPSDVAALLAIKRSLIDPMDNLKNWTKGDPCIVGWTGVVCNSTNGTVGNLRVKELHLLNQNLSGNLAPEISQLSQLEKLDFMWNDLTGSIPKEIGSLRFLRLLLLNGNKLSGSLPDELGNLTNLIRFQVDENQLSGPIPKSYANLTNLKHIHFNNNTLSGQIPSELSTLPKLIHLLLDNNKLSGSLPPELSSLPVISILQLDNNNLEGEIPASYENFSTLVKLSLRNCNLEGQILNFSKNENLSYLDLSWNHFTGPIPPYNLSSQMTTIILSHNHLNGSIPSSFSGLPALQKLSLENNSLNGSVPSSLWEKVVFNSSARLLLDLRDNSFSGISGSTNPPVNVTLRLEGNPFCLNLRGQNSKLFCASKTVDDGLFRSSSTFNESCPVRGCPTDVFFEYVPDSPDPCFCAAPLGIGYRLKSPSFSYFPPYKYSFQEYVTKELTLDKYQLSIDSYDWEGSRMRMYLKIFPLFDSGSHLLNDKEVLRITEKFMSWNFTRNDLFGPYELLNFTFPGHSQIVTLHTEKVGIGTGILAAIIVGSVTCVVLIVAVVILLFTRRSSSRNNLSRKNFSSVIGMKIDGVKAFSFKEMQSATGYFNCSSQVGHGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIHLLSRVHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDWISGCEFSAKTAVNLNFRRRLQIALGSAKGILYLHTEANPPIYHRDIKSRNILLDSKLTAKVADFGLSRLAPDLDYEGDASGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGMHPISHGKNIVREVKLAHQLGTMLSIVDTRLGSVSAECLERFAALALSCCHDKPEDRPSMRVVVRELENILNMMHDDSGTLCSNLSPSSSTGLPSSPTSTSASASYIARDQFASGSISGSDLISGVEPAIRPR 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6829015 6842383 - CmoCh07G012480.1 Cmo07g01248 386556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01248 1024 Pfam Protein kinase domain 687 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01248 1024 Pfam Leucine rich repeat 356 400 IPR001611 GO:0005515
Cmo07g01248 1024 SUPERFAMILY Protein kinase-like (PK-like) 669 983 IPR011009 -
Cmo07g01248 1024 SMART serkin_6 684 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01248 1024 Gene3D Phosphorylase Kinase; domain 1 655 759 - -
Cmo07g01248 1024 Gene3D Ribonuclease Inhibitor 247 350 IPR032675 -
Cmo07g01248 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Cmo07g01248 1024 Gene3D Ribonuclease Inhibitor 92 246 IPR032675 -
Cmo07g01248 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 88 990 - -
Cmo07g01248 1024 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 88 990 - -
Cmo07g01248 1024 ProSitePatterns Protein kinases ATP-binding region signature. 690 712 IPR017441 GO:0005524
Cmo07g01248 1024 ProSiteProfiles Protein kinase domain profile. 684 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01248 1024 Gene3D Ribonuclease Inhibitor 351 443 IPR032675 -
Cmo07g01248 1024 SMART LRR_typ_2 378 402 IPR003591 -
Cmo07g01248 1024 SMART LRR_typ_2 260 284 IPR003591 -
Cmo07g01248 1024 SMART LRR_typ_2 188 212 IPR003591 -
Cmo07g01248 1024 Pfam Leucine rich repeat N-terminal domain 94 132 IPR013210 -
Cmo07g01248 1024 SUPERFAMILY L domain-like 302 443 - -
Cmo07g01248 1024 SUPERFAMILY L domain-like 93 350 - -
Cmo07g01248 1024 Gene3D Transferase(Phosphotransferase) domain 1 760 975 - -
Cmo07g01248 1024 CDD STKc_IRAK 690 961 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00291 Cmo07g01248 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00769 Cmo-Chr1:3980083 Cmo07g01248 Cmo-Chr7:6829015 2.73E-06 dispersed
Cmo07g01248 Cmo-Chr7:6829015 Cmo13g00001 Cmo-Chr13:22044 0 dispersed
Cmo03g00291 Cmo-Chr3:4131651 Cmo07g01248 Cmo-Chr7:6829015 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74491 PF00069 Pkinase 2.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01248 - - cpep:111781604 1487.63