Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01252 ATGAGGCAACAATCCCTTTCTCTAGCATCATCTTTACTCATACTCATATACTTCCACTCTATTGCTGCTGATCTGAACTCAGACAAGCAAGCTCTTCTCGACTTCATTTCGACCGTTCGGCACGGTCGAAAACTCAACTGGGATTCTTCTACCTCAGTCTGCACTACATGGATTGGCATCACTTGCACCTCAGACCGTTCAAACGTGCTCGCTCTTAGGCTGCCTGCCGTTGGTCTATACGGTCCGATCCCCGCCAATACACTCGGAAAGTTACACGCTCTTGGAACTCTGAGTCTTCGATCTAACAATCTTTTCGGAAACGTTCCATCAGATGTTCTAGCCCTCCCCTCCTTAAAGTTTATGTATCTTCAACACAATAACTTTTCAGGTAAAATTCCTTCTTCCCTGTCTCCTAGCCTTACCTTCCTGGACCTGTCTTTCAACGATCTCTCTGGGGACATCCCGACGTCGATACGAACCTTAACGCACTTCATTAGCCTCAACCTTCAAAACAACTCCCTAACTGGATCCATTCCTGATATTGGTCAGCTAAAGCTTAAGCTATTGAACTTGAGCTACAACCATCTTAGTGGTCCTATTCCTGGTTCTTTGCAATCATTTCCTGCTTCATCCTTTGAAGGGAACTTAAAGCTATGTGGCTCTCCTCTGAAAACTTGCTCGGTTAATATCGCCCCCGTACCGTCGTCGTCTCCTCCCGAGAGGGAAAGGAGCATAAATATCGGAGCGATCGTTGCCATTGGATTAGGTGGTTCTGCAGTGCTGTTCCTCCTTGTGTTGATGATTATTGTCTGTTGTATGAAGAAAAAAGATGGTGAAGGTAGTACTGATGCAATGAAAGGAGCTCGTAAAAGAACCAAGCAACCGAAGGAGGATTTCGGAAGCGGGATACAAGAGGCCGAGAAGAATAGGCTGGTTTTCTTTGAAGGATGTTCGTATAATTTTGATCTCGACGACTTGTTAAGAGCCTCGGCCGAGGTGCTCGGAAAAGGTAGTTATGGGACTACTTACAAGGCAATCTTGGAGGAAGGAACAACAGTTGTAGTAAAGAGGTTGAAAGAAATGGTAGCTGGGAAAAAGGAATTTGATCAACAAATGGAGATTGTTGGGAGGATAGGCCAGCATCGAAACGTCGTACCGCTCCGTGCCTATTACTATTCGAAAGACGAGAAGCTTTTAGTTTACGATTATGCCATCGTTGGAAGCTTTTCGACATTACTCCATGGAACCCGAGAAGGCGGTCGGGTGCCACCGGATTGGGAAACGAGACTGAAGGTTTCATTAGGGAGTGCCAAAGGCCTTGCACATATTCATTCAAAGTTCATCCATGGAAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTTAATGGTTGTATATCCGATTTTGGGCTGACTCATTTGATGAACTCCGCTGCCGTTCCGTCTAGAAGCATAGGGTATCGAGCTCCCGAGGTGATCGAGACTCGAAAGTTGACTCAAAAGTCTGATGTTTATAGCTTTGGAGTTGTTTTGCTTGAGATGTTGACTAGGAAAGCTCCAGCCCAATCGCCAGGGCGTGACGAGGTCATGGACCTTCCTAGATGGGTGCAATCTGTGGTTAGAGAGGAATGGACATCAGAGGTGTTTGATGTAGAGCTAATGAAGTATGAGAACATTGAAGAAGAGTTGGTTCAAATGCTTCAAATAGCAATGGCATGTGTGTCTCGAGTGTCTGATATGAGACCAACGATGGAGGAAGTCGTAAGGATGATCGAGGATATTCGACCATCTAGCTCGGGAACTCGACCATCATTAGAAGATAACAAAACCGGAGACGGGAACGGAGACAGGGACAATGACTCGAATACTCCGACCTTGTAA 1884 45.75 MRQQSLSLASSLLILIYFHSIAADLNSDKQALLDFISTVRHGRKLNWDSSTSVCTTWIGITCTSDRSNVLALRLPAVGLYGPIPANTLGKLHALGTLSLRSNNLFGNVPSDVLALPSLKFMYLQHNNFSGKIPSSLSPSLTFLDLSFNDLSGDIPTSIRTLTHFISLNLQNNSLTGSIPDIGQLKLKLLNLSYNHLSGPIPGSLQSFPASSFEGNLKLCGSPLKTCSVNIAPVPSSSPPERERSINIGAIVAIGLGGSAVLFLLVLMIIVCCMKKKDGEGSTDAMKGARKRTKQPKEDFGSGIQEAEKNRLVFFEGCSYNFDLDDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEMVAGKKEFDQQMEIVGRIGQHRNVVPLRAYYYSKDEKLLVYDYAIVGSFSTLLHGTREGGRVPPDWETRLKVSLGSAKGLAHIHSKFIHGNIKSSNILLTQDLNGCISDFGLTHLMNSAAVPSRSIGYRAPEVIETRKLTQKSDVYSFGVVLLEMLTRKAPAQSPGRDEVMDLPRWVQSVVREEWTSEVFDVELMKYENIEEELVQMLQIAMACVSRVSDMRPTMEEVVRMIEDIRPSSSGTRPSLEDNKTGDGNGDRDNDSNTPTL 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6859505 6863503 + CmoCh07G012520.1 Cmo07g01252 386560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01252 627 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cmo07g01252 627 ProSitePatterns Protein kinases ATP-binding region signature. 334 365 IPR017441 GO:0005524
Cmo07g01252 627 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Cmo07g01252 627 MobiDBLite consensus disorder prediction 593 627 - -
Cmo07g01252 627 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515
Cmo07g01252 627 SUPERFAMILY Protein kinase-like (PK-like) 332 592 IPR011009 -
Cmo07g01252 627 PANTHER OS05G0588300 PROTEIN 9 608 - -
Cmo07g01252 627 Gene3D Ribonuclease Inhibitor 139 228 IPR032675 -
Cmo07g01252 627 SUPERFAMILY L domain-like 41 222 - -
Cmo07g01252 627 CDD STKc_IRAK 334 595 - -
Cmo07g01252 627 PANTHER OS05G0480400 PROTEIN 9 608 - -
Cmo07g01252 627 ProSiteProfiles Protein kinase domain profile. 328 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01252 627 Gene3D Transferase(Phosphotransferase) domain 1 406 613 - -
Cmo07g01252 627 MobiDBLite consensus disorder prediction 278 298 - -
Cmo07g01252 627 Pfam Protein kinase domain 331 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01252 627 Gene3D Phosphorylase Kinase; domain 1 296 403 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00295 Cmo07g01252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00689 Cmo-Chr2:4354239 Cmo07g01252 Cmo-Chr7:6859505 0 dispersed
Cmo07g01252 Cmo-Chr7:6859505 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo03g00295 Cmo-Chr3:4176895 Cmo07g01252 Cmo-Chr7:6859505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74492 PF00069 Pkinase 4.70E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01252 - - csv:101210437 1002.28