Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01269 ATGGCGGTTTCTCCTCACTCTTTTCCACCGAGGAAGCGCCGGCCGTCGGCGGCGGCATTCGTCTCCCCAAATTTCTCCGCACAAGCTCTCCTTGACTCACTTCTCTGTCTCTGCCAAGAAATCTCCGCCATGAAACCGCTTCACTTCCTTCTCAACCGCTACTCCAACTCCATGATTCGAAAATCGCGATTGCTCGAGGTTATTCTCGAGGATTTCCGTCGCGATCGGATTGTTTCTCTTTCGGCCTCTGCCTCGCTCTGTCTCGAAGAAATGTATATCGTTTTGCAGAGAATCAAGACCTTGATTGAAGACTGTTCTAATGGAAGCAAGATGTGGCTACTTACACAAAACGAATCTATTGCTAATAATTTTCATGAACTCACCTTGGATTTATCGACTCTTCTTGATATTTTTCCTGTGAAGGACGCTGGATTAACGGAAGACGTTGAGGAATTGTTCTATCTCTTGAGAAATCATTGCTCCGAATCCTCCGCTTTCGTCGATCCGAGAGATGAAGATCTCCGATTCAGAGTTTTGAAAACGATCGATCGGATTAGAGACGAAATCGTTCCCGATTATACCGAGTTGTCAGAGATTTTCTCGAGGATTGATCTTCGAGATTCTTCGAGTTGCAGAGAGGAAATCGAGAATCTCGAAGACGAGGTACAGAATCAAACGGATGAGAAATCGAGATCTGATGTGATTGCGTTGATCGGATTTGTTCGTTACGCGAAATGCGTTCTCTACGGCGCATCGACGCCGGAATCTGGATTTCAGCGGAAGGATTCGATCTCCGATTTGGCTTTACCAGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCACGATCCTGTAGTCGTGGCGACAGGTCATACGTACGATCGTGCGGCCATTACGCTCTGGATTGAATCTGGGCATAACACGTGTCCCAAGACAGGTCAGACTCTGGCCCACACGGACCTAATTCCGAACCGGGCTTTGAAAAATTTGATAGCGATGTGGTGCCGTCAGGAGAGAATTCCGTTTGATGTAACGGAAAGTAACAAGGGGGGTATTAACGGCGTTACGTTAAACAAAGCGGCTTTGGAAGCAATGAGAATGACGGCGTCGTTTCTTGTGAACAAACTCGCGACGCCATTAGATTCCGTAAACGACGCGAACGGCGTCGTTTACGAGCTTCGCGTTTTGGCCAAAACAGATTCCGGCAGCCGTGGATTCATCGCGCAAGCCGGAGCTCTGCCGTTGCTTGTACGTCACCTCATCTCCGACGACCCGACTCTGCAAGTTAACGCCGTCACGACGGTGCTCAACCTCTCCATTCTTGAAGCGAACAAGTCTCTGATTATGGAGACCGACGGCGCGTTGATTGGAGTGATTGAGGTGCTCCGGTCCGGCGCCACGTGGGAGGCGAAAGGGAACGCCGCTGCCACGATCTTCAGCCTATCCAGTGTCCATAGTTACCGGCGGAGATTAGGAAGGAAGACACGTGTCATAAGGGGATTGCTCGATTTGGCCAAAGACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTGACGATTCTAACATTAGCCGGTGATCGAGAGACCGTCGGGAGGTTAATTGAAGGTGGGGTTATGGAGACGGTGAGCCATGTGATGAACAGTTTACCGGAGGAGGCGGTGACGATTCTGGAAATGGTGGTCAGGAAAGGGGGATTTGTGGCGATTGCTTCGGCTTTCAATCTGATTAAGAAATTGGGGACGGTTTTGAGAGAGGGCTCCGATAGGGCTCGAGAGAGCGCCGCGGCGGCTCTGGTGACAATGTGCCGGCAAGGTGGGTCGGACATGGTGACGGAGCTGGCATCGATGGCTGGAATTGAGAGAGTCATTTGGGAGATGATGGGGAGTGGGACGATGAGGGGACGGCGGAAAGCGGCGTCGCTGTTGAGAATACTCCGACGATGGGCGGCGGGTTTGGACAGAAATGGCGGCGTGGGCGGAGGAGACTTAACGATGGTGAGTTCTTCAAGAATGGTCGGCGATTCCACCACCATTGTTAGTCCATCGAGCGGAGCAATTGTTAATAGCTAG 2073 50.94 MAVSPHSFPPRKRRPSAAAFVSPNFSAQALLDSLLCLCQEISAMKPLHFLLNRYSNSMIRKSRLLEVILEDFRRDRIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNHCSESSAFVDPRDEDLRFRVLKTIDRIRDEIVPDYTELSEIFSRIDLRDSSSCREEIENLEDEVQNQTDEKSRSDVIALIGFVRYAKCVLYGASTPESGFQRKDSISDLALPADFRCPISLDLMHDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTDLIPNRALKNLIAMWCRQERIPFDVTESNKGGINGVTLNKAALEAMRMTASFLVNKLATPLDSVNDANGVVYELRVLAKTDSGSRGFIAQAGALPLLVRHLISDDPTLQVNAVTTVLNLSILEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSVHSYRRRLGRKTRVIRGLLDLAKDGPINSKRDALVTILTLAGDRETVGRLIEGGVMETVSHVMNSLPEEAVTILEMVVRKGGFVAIASAFNLIKKLGTVLREGSDRARESAAAALVTMCRQGGSDMVTELASMAGIERVIWEMMGSGTMRGRRKAASLLRILRRWAAGLDRNGGVGGGDLTMVSSSRMVGDSTTIVSPSSGAIVNS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6957282 6959354 - CmoCh07G012690.1 Cmo07g01269 386577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01269 690 Gene3D - 370 644 IPR011989 -
Cmo07g01269 690 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Cmo07g01269 690 SUPERFAMILY RING/U-box 261 341 - -
Cmo07g01269 690 PANTHER U BOX DOMAIN-CONTAINING 11 663 - -
Cmo07g01269 690 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cmo07g01269 690 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cmo07g01269 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 663 - -
Cmo07g01269 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 344 IPR013083 -
Cmo07g01269 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Cmo07g01269 690 SUPERFAMILY ARM repeat 372 646 IPR016024 -
Cmo07g01269 690 Pfam Armadillo/beta-catenin-like repeat 404 440 IPR000225 GO:0005515
Cmo07g01269 690 Gene3D - 53 140 IPR036537 GO:0007166
Cmo07g01269 690 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cmo07g01269 690 Coils Coil 208 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00311 Cmo07g01269 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01269 Cmo-Chr7:6957282 Cmo18g00411 Cmo-Chr18:2697402 1.02E-131 dispersed
Cmo03g00311 Cmo-Chr3:4303256 Cmo07g01269 Cmo-Chr7:6957282 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01269 - - cmax:111465978 1298.88