Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01270 ATGCCGGAATTCGACGGCGGCGACTCTTCACCGGAGGGGATTCTGTTCGGAAAATATGAACTCGGGAAGCTTTTAGGCCGTGGAGCCTTCGCGAAGGTCTACCATGGCAGAAACGTTCATACAGGACAAAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTCTTAAATGGCGGTTTCACGGCGCACGTTAAGAGAGAAATTGATATCATGCGCCGCCTCCGCCATCCCAACGTCGTTCGTCTTTTCGAAGTTCTTGCAACGAAGACGAAGATTTATTTCGTAATGGAATTCGCCAAAGGCGGAGAGCTTTTCACGAAGGTTTCCAAAGGACGATTCAGTGAGAATCTCAGCCGTCGATATTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCATCGCGATTTGAAACCGGAAAATCTCCTTCTCGATGAAAATTTCGATCTCAGAGTTTCGGATTTCGGACTCGGTGCTTTAACGGATCAGATTCGGCCCGACGGATTGCTCCATACACTCTGTGGAACCCCGGCGTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGCGCGAAGATCGACGTCTGGTCTTGCGGTATAATCCTCTATGTTCTTACTGCTGGATTTCTTCCGTTTAATGATTCCAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGTCCGAAATGGACGTCGCCAGATCTCCGGCGGTTTTTATCGCGGCTTCTGGATACGAATCCGGAGACGAGGATCACCGTCGATGAGATTCATCAAGATCCGTGGTTCAGAAAGGGATTTCAAGAGGAGAAGATTCAATTCGAGGATTATTCGGTTTCAGAGCTTTACGGCGATATGAACAATGCGAAATGTTTGAATGCTTTTGATTTAATTTCGTTCTCTCTTTGCTTCGATTCAACTGGATTGATCAACGAGACGGAATTTTCGTCCGATGTTGAGAGGTTTCTCTCCGCCGAATCGCCGGAGAAGATCATAATGACGGTGGAGGAGGTTTCGAAGTCGGAAAATGCGGCGGTGGAGAAGAACGGGTGGGGAGTTAGAGTGGAAGGGCACGACGGCGGATTCGTCGCCGTTATAGAGATTTTCCGGCTGACGGAGGAATTGGTGGTGGTTGAGATCAAAAACAGAGTGAGGGAAATCGATCAAATTTGGAAAGAAAAATTAAGACCTCAACTCGATTGTTTGATCTACCAGTCCGAGTAA 1254 47.61 MPEFDGGDSSPEGILFGKYELGKLLGRGAFAKVYHGRNVHTGQSVAIKAVNKLKVLNGGFTAHVKREIDIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFTKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDENFDLRVSDFGLGALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGFLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFRKGFQEEKIQFEDYSVSELYGDMNNAKCLNAFDLISFSLCFDSTGLINETEFSSDVERFLSAESPEKIIMTVEEVSKSENAAVEKNGWGVRVEGHDGGFVAVIEIFRLTEELVVVEIKNRVREIDQIWKEKLRPQLDCLIYQSE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6968245 6969498 + CmoCh07G012700.1 Cmo07g01270 386578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01270 417 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Cmo07g01270 417 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01270 417 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01270 417 CDD CIPK_C 303 410 - -
Cmo07g01270 417 SUPERFAMILY Protein kinase-like (PK-like) 15 284 IPR011009 -
Cmo07g01270 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cmo07g01270 417 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01270 417 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 11 415 - -
Cmo07g01270 417 Pfam NAF domain 300 358 IPR004041 GO:0007165
Cmo07g01270 417 Gene3D Phosphorylase Kinase; domain 1 11 98 - -
Cmo07g01270 417 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
Cmo07g01270 417 PANTHER - 11 415 - -
Cmo07g01270 417 Gene3D Kinase associated domain 1, KA1 298 415 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00313 Cmo07g01270 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00704 Cmo-Chr2:4428434 Cmo07g01270 Cmo-Chr7:6968245 0 dispersed
Cmo07g01270 Cmo-Chr7:6968245 Cmo20g00338 Cmo-Chr20:1665343 1.00E-178 dispersed
Cmo03g00313 Cmo-Chr3:4316184 Cmo07g01270 Cmo-Chr7:6968245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74495 PF00069 Pkinase 9.10E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01270 - K12761 csv:101208826 729.554