Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01272 ATGGAGAAGAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTGTTGGGGCAGGGAACCTTTGCCAAGGTTTACTATGCCAGAGACATTAAAACTGGCTTGTGTGTGGCTATTAAAGTTATTGACAAAGAGAAGATCTCGAAGGTTGGGATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGAATAGTTAAGCATCCGAACGTAGTTGAACTTTATGAGGTTATGGCAAGCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGTGGTGAGCTATTCAATAAGGTATCCAAAGGGAAGCTTAAAGAAGGTGCTGCACGGAAATTCTTTTGGCAGCTGATCAGTGCTATCGATTATTGCCACAGTAGAGGCGTATGGCATCGAGATTTGAAACCAGAAAATTTACTACTGGATGAACATGGTAATCTGAAGGTTTCCGATTTTGGGTTGAGTGCTCTTGTTGAATCTAAATGCCAAGATGGGTTGCTCCATACTACCTGTGGAACACCTGCTTACGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCATGTGGAGTGATCTTATTCGTTCTATTGGCTGGTTATCTCCCATTTCATGATTCAAATCTAATGGAAATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTACGCCAGAGGCGCGCAGGCTATTGTCGAAGATTTTGGATCCTAACCCAAATACTAGGATATCCATCGCCAAAATAATGGGAAGTTCTTGGTCAAGGAGGGGGTTGGATGTGAAACCCCGAATTAAAGCAGAAGAAGTGAAAGATGTCGATCCTTCAGAAGTCGATGCAGTTTTCGGGTCTTCAACGGACGAGAGAGATTCTGTTAGAGAGCTGAAGCAATTAGTGGAAAAGCCATCGAATTTGAATGCCTTTGACATTATCTCCTTATCAGCAGGTTTTGATTTGACAGGTTTGTTCGAGGAGACTACTGATCAAAAGAAAGAAGTAAGATTCACATCAAACAAGCCTGCGCCCACCATCATCTCAAAACTGCAAGATCTCGCAAAGTGTATGAAACTGAAAATAATGAAGAAAGACAGAGGCGTATTGAAGATCGAAGGGTGTAAGGAAGGTCGAAAAGGACCTGTATGCATTGACGCCGAGATTTTTGAGGTTGCCCCATCATTCCATGTAGTCGAAATGAAGAAATCGAACGGAGATACTCTGGAATATCATAAGATCATGAAAGAGGATATAAGACCTGCTCTGAAGGATATTGTATGGACCTGGCAAGGCGAGCAGCAATAG 1332 41.59 MEKKGAILMQRYELGRLLGQGTFAKVYYARDIKTGLCVAIKVIDKEKISKVGMIDQIKREISVMRIVKHPNVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKEGAARKFFWQLISAIDYCHSRGVWHRDLKPENLLLDEHGNLKVSDFGLSALVESKCQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFTPEARRLLSKILDPNPNTRISIAKIMGSSWSRRGLDVKPRIKAEEVKDVDPSEVDAVFGSSTDERDSVRELKQLVEKPSNLNAFDIISLSAGFDLTGLFEETTDQKKEVRFTSNKPAPTIISKLQDLAKCMKLKIMKKDRGVLKIEGCKEGRKGPVCIDAEIFEVAPSFHVVEMKKSNGDTLEYHKIMKEDIRPALKDIVWTWQGEQQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6994481 6995812 - CmoCh07G012720.1 Cmo07g01272 386580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01272 443 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01272 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cmo07g01272 443 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01272 443 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cmo07g01272 443 Pfam NAF domain 313 372 IPR004041 GO:0007165
Cmo07g01272 443 Gene3D Transferase(Phosphotransferase) domain 1 92 271 - -
Cmo07g01272 443 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Cmo07g01272 443 PANTHER - 2 443 - -
Cmo07g01272 443 SUPERFAMILY Protein kinase-like (PK-like) 8 282 IPR011009 -
Cmo07g01272 443 Gene3D Kinase associated domain 1, KA1 310 437 - -
Cmo07g01272 443 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cmo07g01272 443 CDD CIPK_C 317 432 - -
Cmo07g01272 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 443 - -
Cmo07g01272 443 CDD STKc_SnRK3 11 265 - -
Cmo07g01272 443 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00316 Cmo07g01272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00706 Cmo-Chr2:4431875 Cmo07g01272 Cmo-Chr7:6994481 0 dispersed
Cmo07g01272 Cmo-Chr7:6994481 Cmo13g00625 Cmo-Chr13:6757756 0 dispersed
Cmo14g02202 Cmo-Chr14:15688817 Cmo07g01272 Cmo-Chr7:6994481 1.90E-151 dispersed
Cmo20g00339 Cmo-Chr20:1670464 Cmo07g01272 Cmo-Chr7:6994481 3.27E-164 dispersed
Cmo03g00316 Cmo-Chr3:4336478 Cmo07g01272 Cmo-Chr7:6994481 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74496 PF00069 Pkinase 7.90E-75 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01272 K07198 - csv:101209068 768.074