Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01303 ATGAGAAAGGAAATTTTGTTGCAGTGTGTTGATGAAAATGCTGAAGTGAATGGTTGTTCAACAATTGGGAATGATGAAGATTTGGGTGCTCAGTCTCGCCATAGTGTAGGCAAGGAATTTGGGGCAAGTTGTCGTGTGTGTCAATGTACTGAATCGGACAGAAGGGGTGATGCTGCCTTAGGATTTCTTGGCATCACTTCTCCGAAAATGGAAGCAAGAAAAAACGACGGGGATTCTAAGCCCGAGAAGCAAAGTGTAAAAAATGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATTATGAAGATGCATTAGTCGAGCTTGGATGTTCTTGTAAGAGTGACCTTGCTCTCGTACATTATGCGTGTGCTCTCAAGTGGTTTGTCAATCATGGATCTACAGTTTGTGAAATCTGTGGATGTGTTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGCTAATGGGGAACCTAATCCTACGCATACTAATACCAGTACTGATATAGATCCAGATGCTGTTGCTGCTGTCCGCAGGCAGCGACTTTGTGAAATCTCGTTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAATTCTACTGCAGCCTCCCAGGTTGCTTTGGAACATCCAAATATCGTCCCGGAAAATGTTATTCATGCTGAAAATCGTGCAACCAGATGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACTGGACTGCTTACTGTTACGCTCGCTTGCCTAATAGCTCCTCGTCTGGGGAAGAAAACTGCGAGAAGTGGCCTTCACATTCTTCTTGGAGGAGTTTGTGCGTTAGCCGTGGTTGTTTTCTTCCGCTTTTTTGTGCTTACCAGGATAAAATACAGTCTTGCACGATATTGGGCTATTTTGTTCATCTTTTTGTTCCTGGTGTTGTTCGGCATTTGGGCATCGAGGACACATGGTGCTCGTACGACGTAA 1062 42.84 MRKEILLQCVDENAEVNGCSTIGNDEDLGAQSRHSVGKEFGASCRVCQCTESDRRGDAALGFLGITSPKMEARKNDGDSKPEKQSVKNVKRDSGSIEFIGPNGEVFICKADIEMGSCHYEDALVELGCSCKSDLALVHYACALKWFVNHGSTVCEICGCVAENIRTDDFRKVVSSLKEYEALRERTANGEPNPTHTNTSTDIDPDAVAAVRRQRLCEISLWFSPHNYSSNNNSTAASQVALEHPNIVPENVIHAENRATRWAVEGTGILLATGLLTVTLACLIAPRLGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYSLARYWAILFIFLFLVLFGIWASRTHGARTT 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7258932 7262381 + CmoCh07G013030.1 Cmo07g01303 386611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01303 353 ProSiteProfiles Zinc finger RING-CH-type profile. 100 164 IPR011016 GO:0008270
Cmo07g01303 353 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 25 352 - -
Cmo07g01303 353 Pfam RING-variant domain 123 157 IPR011016 GO:0008270
Cmo07g01303 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cmo07g01303 353 SMART ringv_2 117 158 IPR011016 GO:0008270
Cmo07g01303 353 PANTHER ZINC FINGER, RING-CH-TYPE 25 352 - -
Cmo07g01303 353 MobiDBLite consensus disorder prediction 183 202 - -
Cmo07g01303 353 SUPERFAMILY RING/U-box 123 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00035 Cmo-Chr3:667550 Cmo07g01303 Cmo-Chr7:7258932 0 dispersed
Cmo07g01303 Cmo-Chr7:7258932 Cmo13g00088 Cmo-Chr13:532189 9.24E-09 dispersed
Cmo07g01303 Cmo-Chr7:7258932 Cmo07g01079 Cmo-Chr7:5607475 2.14E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01303 - - csv:101218157 548.51