Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01305 ATGGCGGCAGCTCAGCTCACAGGATCTCTAATTTCTGCGAGGAACCTGCCTTCTTTCGATGGCCTTCGTCCTTCTGCGGTGAAATTCTCTCCTTCTATCGTTCATATGATAGTGGGGGGTCGGGCCAACAGATCTTACACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCGATCAAGCCATTGGGCGACAGAGTGCTGGTGAAAATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACGGCTCAGTCCAAACCTCAAGGTGGGGAGGTTGTTGCGGTTGGAGAAGGCAAGTCAATTGGAAATACCAAAGTGGAAAGTAGTGTAAAGACTGGTGCTCAAGTTGTGTACTCCAAGTATGCTGGAACTGAGTTAGAGTTCAATGGTTCAAAGCATCTTATTCTGAAGGAAGATGATATCGTCGGTATTCTAGAAACCGATGATGCGAAAGATCTTCAGCCCCTAAACGACAGGGTCTTGATCAAGGTGGCTGCGGCTGAGGAAAAAACAGCAGGAGGTTTGCTGCTGACAGAGGCATCCAAAGAGAAACCGTCGATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGACGAGGAGGGCAACAAGAAACCGCTTTCGATTGCAGCGGGAAATAACGTGATGTACTCGAAGTATGCTGGGAACGAGTTCAAGGGCAAAGATGGATCTGATTTCATCGCTTTGAGGGCTTCAGACGTGATTGCAGTTCTATCTTAG 768 48.18 MAAAQLTGSLISARNLPSFDGLRPSAVKFSPSIVHMIVGGRANRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKSIGNTKVESSVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLDEEGNKKPLSIAAGNNVMYSKYAGNEFKGKDGSDFIALRASDVIAVLS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7267547 7270909 + CmoCh07G013050.1 Cmo07g01305 386613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01305 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 CDD cpn10 162 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524|GO:0006457
Cmo07g01305 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Cmo07g01305 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
Cmo07g01305 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457
Cmo07g01305 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Cmo07g01305 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cmo07g01305 255 CDD cpn10 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo07g01305 255 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 255 - -
Cmo07g01305 255 SUPERFAMILY GroES-like 62 155 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01144 Cmo-Chr7:6108716 Cmo07g01305 Cmo-Chr7:7267547 3.20E-07 dispersed
Cmo07g01305 Cmo-Chr7:7267547 Cmo10g00813 Cmo-Chr10:3788365 4.41E-170 dispersed
Cmo07g01305 Cmo-Chr7:7267547 Cmo06g01215 Cmo-Chr6:9245490 2.83E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01305 K04078 - csv:101212396 446.432