Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01328 ATGTGGTCTAAGTCCGATAATAAACCGGACGGATCTGAGATATTTAGCAACTCATCAAAAGGGGAAAACGATTGTCACGGAGGAATGAACGTAAACGCACCAAATTTCGTGAAAAATCCTCCGGATTCTCTCAGAAGAATCGATCAAATCGCCAAAAACGGCATAAATTCCGGGAATCAGACGGCGACGATGAACCACGAGTTTCATTCCGGGCAGGCAGGGGGGTCGATTGCGCCGATTCCGAGCGGTGCACCTGCAACAAACATGAAGAACATCAACAATAACAACAACTCTACTTTCTTTCCGACGAAGAGCGGCTGCGATGGCATGGAGACGCTAGGAATGGTGATTAAACCGCACACAGGCGGGGATGTGCGATGGGACGCTGTGAACATGGTGTCGAAAGGAGGCCAGTTGAATCTGAGCCATTTCAGGCTTCTGAAGCGGCTTGGTTATGGCGATATCGGAAGTGTTTATCTGGTGGAATTGAGAGGAACTGATACGTTTTTCGCCATGAAAGTTATGGACAAAGCTTCATTGGCGAGTCGGAATAAGGTTGTTAGGGCACAGACGGAGAGGGAGATTTTAGGGCTTTTGGATCATCCATTTTTGCCGACTCTGTATTCCTATTTCGAAACTGATAAGTTCTATTGCTTGGTTATGGAGTTTTGTAGCGGCGGAAATCTTCATTCTCTTCGTCAGAAACAACCTAACAAGTATTTCACAGAAGAAGCTGCCAGATTCTATGCATCAGAAGTTCTATTAGCACTCGAATATCTTCACATGTTAGGAATAGTTTACAGAGATTTGAAACCAGAGAACCTGTTAATCCGAGACGAAGGCCACATCATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCTACTCTCGTCAAATCCTCCTCCGTCAATGTCAATGGCAGCTCCACCACCGGACACGCCGGCACCAACGGTGGCGGCAGCGGCGGTATCCTCGACGATGAGTTCGCCGTCCATGGATGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGCAAGTCGAAATCCGACTTCGGCCTCTTCGTCGGCGGAGCATTGCCGGAACTCATGGCGGAGCCGACGAATGTTAGATCGATGTCGTTTGTCGGCACGCACGAGTATTTAGCGCCGGAGATCATCCAAGGCGAAGGCCATGGCAGCGCCGTTGACTGGTGGACATTTGGAATCTTCCTCTACGAGCTTCTTCACGGAACAACGCCGTTTAAAGGATCTGGAAATAGAGCTACTCTGTTTAATGTTGTCGGACAGCCGCTTAGATTCCCGGAGACGCCGCAGGTGAGTCTACAGGCGAGGGATCTGATCAGAGGCCTTCTTGTGAAGGAGCCGCAAAAGAGAATCGCGTACAGAAGAGGCGCTACTGAGATTAAACAGCATCCGTTCTTCGATGGAGTGAACTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTGCCGGAGCCGGTCGACTTCTCACAGTTCGCCCGTAAGAAGAGCGGTGGTAGCGGTGTAGGCAGTGGCGGTGGAGCGGTAGAAGTAGCAGCGGCAGGAGCGGCGGCGGCGGCGGCGTCACCTGTGGAGAGTTCTTCGCCTTCTACTGGACGCGATCCCAATTATGTGGATTTTGAATACTTCTAG 1680 51.19 MWSKSDNKPDGSEIFSNSSKGENDCHGGMNVNAPNFVKNPPDSLRRIDQIAKNGINSGNQTATMNHEFHSGQAGGSIAPIPSGAPATNMKNINNNNNSTFFPTKSGCDGMETLGMVIKPHTGGDVRWDAVNMVSKGGQLNLSHFRLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKVVRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSTTGHAGTNGGGSGGILDDEFAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPETPQVSLQARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKSGGSGVGSGGGAVEVAAAGAAAAAASPVESSSPSTGRDPNYVDFEYF 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7501805 7503721 + CmoCh07G013280.1 Cmo07g01328 386636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01328 559 CDD STKc_phototropin_like 142 504 - -
Cmo07g01328 559 SMART serkin_6 144 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01328 559 MobiDBLite consensus disorder prediction 536 559 - -
Cmo07g01328 559 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 92 559 - -
Cmo07g01328 559 MobiDBLite consensus disorder prediction 1 30 - -
Cmo07g01328 559 MobiDBLite consensus disorder prediction 1 25 - -
Cmo07g01328 559 PANTHER FLIPPASE KINASE 1-RELATED 92 559 - -
Cmo07g01328 559 Gene3D Phosphorylase Kinase; domain 1 142 227 - -
Cmo07g01328 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Cmo07g01328 559 Gene3D Transferase(Phosphotransferase) domain 1 228 297 - -
Cmo07g01328 559 Pfam Protein kinase domain 377 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01328 559 Pfam Protein kinase domain 145 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01328 559 SUPERFAMILY Protein kinase-like (PK-like) 141 507 IPR011009 -
Cmo07g01328 559 MobiDBLite consensus disorder prediction 70 91 - -
Cmo07g01328 559 ProSiteProfiles Protein kinase domain profile. 144 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01328 559 Gene3D Transferase(Phosphotransferase) domain 1 359 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01328 Cmo-Chr7:7501805 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo03g00110 Cmo-Chr3:1547262 Cmo07g01328 Cmo-Chr7:7501805 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74497 PF00069 Pkinase 1.60E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01328 - - cmos:111435499 857.44