Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g01333 | ATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCCTTCAATTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGCTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCAGTCGCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCATTCTTACGATTCATGGGCGACGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGCCGAATATGGAAGGAAGAATGAGAATGAGAACGAGGACGATGACGATGACGATGCCACGGTGTTGAGCTGGATTCATTCATACGATGATCACATGATGAAATCTTTGAACATTGGTTTGAAGGCAGCCAATACCAAACAGTTGTATTTTGTTGAAATCCATTACACCCATGCCTTTCCCCTCCCTTGCTCCCATTCTCTCTTTCTCTCTCGTACCTTCTTCATTTCTCCCTCTAAAATGGAAGAAGCTGACCCCAGCAAGGTTCTTGATCTCATCAAAGAGCTTGTTCTTCGTCTTCTTTCTCACAATCCCACCTCCGATTCCATCTCTACCTCCTCCCATTTCGACAAATCCCTTCGCTATGCAATTCGCATTCTCACTAGTCGAATGACTCCCTCCATTGCTCCTGATGCTGCCGCCATCGCTGAGTCCATCAAGCGCAGGCTCGCCACCGAGGGTAAGTCTTCTCAGGCCCTCACTTTTGCTGATCTTTATACTAAATTTGCATCCAAAACCGGCCCTGGGAGTGTAAATAACAAATGGGCTGTGCTTTATTTGATTAAAATTGTGGCGGAGGATCGGAAATGTAAACGGACCCAGTTTGAATCTTCAATGCTTTTGCCTAATTTAGTAGCGAGTGATCCTGTGTTAGGAAAGAATTCTGGGGGTTTACGGCCGTGTGAGGAGTGGCAGAAGGGGGTTTTGTTGGTTTCAAAAGACCCTGAAAATCTTCGCGATATTGCTTTCAAGGAGTTTGCTAATTTGCAAAAGGAGGAAAATGAAGTGACTGAAGAGGCTTTGGTGAGGGATGTATTGTATGCTTGTCAAGGAATTGATGGGAAGTATGTGAAATTTGACAACAATGCTGATGGGTATGTTTTGTCCAATTTAGTTAAGGCTCCCAGGGCAACTAGGACGACGGTTCGCAAGCTCGGTGAAATCGGGTGGCTGTTTAGGAAGGTTAAAGGTTATATCTCGGAAAGTATGGAACGTTTTCCAGCTGAAGATGTTGGAACTGTTGGACATGCTTTTTGTGCTACATTGCAGGATGAGCTTTCGGAATACTATAAACTGTTGGCAGTTCTCGAAGCTCAGTCGATGAATCCGATACCTATGATTTCGGAGACAGCAAGTTCAGGAAACTATCTCTCACTAAGGAGATTGATAGTCTGGCTTTCTGAGCCAATGGTGAAAATGAGGTTGATGGCTGTATTGGTCGATAAGTGTCGAGTCTTGAAGGGTGGGGCGATGGCTGGGGCTATCCATTTACATGCTCAGCATGGTGACCCGTTGGTGCTTGAGTTCATGAGTCGTTTGCTGCGGCGTGTATGCTCTCCACTTTTTGAGATGGTGAGGAGTTGGGTTTTGGAAGGGGAGCTAGAAGACATTTTTGCTGAGTTTTTCGTTGTTGGGCAGCAAGTGAAGGCCGAATCGCTCTGGAGGGAAGGTTATAGGCTTCGTACCAGCATGCTTCCATCTTTCATTTCGCAATCTCTAGCCCGACGTATATTGAGGACTGGGAAATCGATTAATTTCCTTCGTGTTTGTTGCGAGGATATGGGATGGGCTGATGCTGCAACAGAAGCAGCAGTAGCCGCTGGGACCTCGACCCAAAGGGGAGGTCTCGGATATGGCGAAACCGATGCTCTTGAATCTTTGGTAGATGGAGCAGCAAAAAGAATAGACAAACACTTGTTGGATGTCATACACAAGCGGTATAAGTTCAAAGACCATTGTCTAGCAATTAAGCGCTATTTGCTATTAGGACAAGGTGATTTTGTCCAATATCTGATGGATATTGTTGGGCCAGAGCTTTCTGAGCATGCCAATGCTATTAGCTCGTTTAAGTTATCCGGTCTCCTCGAAACCGCGATTCGTTCTTCCAATGCCCAGTATGATGATCCCGACATCTTGGATAGATTAAAGGTTAAGATGATGCCTCATGGAACCGGAGATCGGGGTTGGGATGTATTTTCATTGGAATATGAGGCAAGAGTTCCATTAGATACTGTATTTACAGAGTCTGTCATGTCAAAATATTTAAGGATCTTTAATTTCCTATGGAAGCTTAGACGGGTCGAGCATGCGCTTATGGGTACTTGGAAGACAATGAAGCCAAACGGCATCACGTCGTGTTCATTGACTAAGCTGCACCATGGGGTTAAGAAGCAATTGCTCTCGACATTAAGGCGATGCCAGGTCCTTTGGGTCGAGATGAATCATTTTGTTACGAACTTGCAGTACTACATAATGTTTGAAGTCTTGGAAGTATCATGGTCTGATTTTTCAAATGAAATGGAAGCAGCAATGGATTTGGATGATTTACTTGCAGCTCATGAAAAGTATCTTCATTCAATATTTGAGAAGTCTCTTCTTGGAGAACAATCTCAGACACTTTGCAAGTCGCTTTTTGGCTTATTTGATCTAATATTACGATTTCGAAGTCACGCCGACAGATTATACGAGGGAATACATGAATTACAATGCAGAACAATAGAATCATCTTTACCCTCCAGAGACAAGAGTAAGAAAAATCGTTCAACAGAAAAATCTTTCGACACGTCGTCGTGGATAGCTGATGGCGAGAATGCTCTAACACGACGTGCTGGTGAATTTCTTCGGAATGTTGAGCAAGATCTAGCTGCATTAGCCAAACAGTATTCGTCATTGCTCGAGGGGTTCATTTCTCAGCTGCCTTTGCAACAGCATGTTGATTTGAAGTTTCTTCTTTTCCGCCTCGACTTTACGGAATTTTACAGCCAGTTACAACCTCATGTGTAG | 3585 | 44.63 | MAPGSSTCKKVDSHPSISGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKAEYGRKNENENEDDDDDDATVLSWIHSYDDHMMKSLNIGLKAANTKQLYFVEIHYTHAFPLPCSHSLFLSRTFFISPSKMEEADPSKVLDLIKELVLRLLSHNPTSDSISTSSHFDKSLRYAIRILTSRMTPSIAPDAAAIAESIKRRLATEGKSSQALTFADLYTKFASKTGPGSVNNKWAVLYLIKIVAEDRKCKRTQFESSMLLPNLVASDPVLGKNSGGLRPCEEWQKGVLLVSKDPENLRDIAFKEFANLQKEENEVTEEALVRDVLYACQGIDGKYVKFDNNADGYVLSNLVKAPRATRTTVRKLGEIGWLFRKVKGYISESMERFPAEDVGTVGHAFCATLQDELSEYYKLLAVLEAQSMNPIPMISETASSGNYLSLRRLIVWLSEPMVKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMSRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGQQVKAESLWREGYRLRTSMLPSFISQSLARRILRTGKSINFLRVCCEDMGWADAATEAAVAAGTSTQRGGLGYGETDALESLVDGAAKRIDKHLLDVIHKRYKFKDHCLAIKRYLLLGQGDFVQYLMDIVGPELSEHANAISSFKLSGLLETAIRSSNAQYDDPDILDRLKVKMMPHGTGDRGWDVFSLEYEARVPLDTVFTESVMSKYLRIFNFLWKLRRVEHALMGTWKTMKPNGITSCSLTKLHHGVKKQLLSTLRRCQVLWVEMNHFVTNLQYYIMFEVLEVSWSDFSNEMEAAMDLDDLLAAHEKYLHSIFEKSLLGEQSQTLCKSLFGLFDLILRFRSHADRLYEGIHELQCRTIESSLPSRDKSKKNRSTEKSFDTSSWIADGENALTRRAGEFLRNVEQDLAALAKQYSSLLEGFISQLPLQQHVDLKFLLFRLDFTEFYSQLQPHV | 1194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7517223 | 7524709 | - | CmoCh07G013330.1 | Cmo07g01333 | 386641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g01333 | 1194 | CDD | RING-HC_SIAHs | 56 | 94 | - | - | |
Cmo07g01333 | 1194 | PANTHER | GAMMA-TUBULIN COMPLEX COMPONENT | 375 | 1182 | - | - | |
Cmo07g01333 | 1194 | SUPERFAMILY | RING/U-box | 52 | 98 | - | - | |
Cmo07g01333 | 1194 | Gene3D | - | 844 | 1186 | IPR042241 | - | |
Cmo07g01333 | 1194 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 110 | IPR013083 | - | |
Cmo07g01333 | 1194 | Pfam | Gamma tubulin complex component C-terminal | 845 | 1187 | IPR040457 | GO:0043015 | |
Cmo07g01333 | 1194 | Coils | Coil | 613 | 633 | - | - | |
Cmo07g01333 | 1194 | Pfam | Gamma tubulin complex component N-terminal | 536 | 839 | IPR041470 | - | |
Cmo07g01333 | 1194 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Cmo07g01333 | 1194 | Coils | Coil | 1141 | 1161 | - | - | |
Cmo07g01333 | 1194 | Pfam | Seven in absentia protein family | 100 | 269 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cmo07g01333 | 1194 | SUPERFAMILY | TRAF domain-like | 111 | 268 | - | - | |
Cmo07g01333 | 1194 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 273 | IPR008974 | GO:0005515 | |
Cmo07g01333 | 1194 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cmo07g01333 | 1194 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 166 | IPR013083 | - | |
Cmo07g01333 | 1194 | ProSiteProfiles | Zinc finger SIAH-type profile. | 111 | 171 | IPR013010 | GO:0008270 | |
Cmo07g01333 | 1194 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 94 | IPR001841 | - | |
Cmo07g01333 | 1194 | PANTHER | GAMMA TUBULIN COMPLEX PROTEIN | 375 | 1182 | IPR007259 | GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00109 | Cmo07g01333 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00708 | Cmo-Chr6:3593397 | Cmo07g01333 | Cmo-Chr7:7517223 | 7.82E-28 | dispersed | |
Cmo07g01333 | Cmo-Chr7:7517223 | Cmo18g00871 | Cmo-Chr18:10014647 | 1.04E-134 | dispersed | |
Cmo16g01019 | Cmo-Chr16:7039727 | Cmo07g01333 | Cmo-Chr7:7517223 | 8.37E-22 | dispersed | |
Cmo02g01212 | Cmo-Chr2:7288344 | Cmo07g01333 | Cmo-Chr7:7517223 | 3.62E-12 | transposed | |
Cmo03g00109 | Cmo-Chr3:1532343 | Cmo07g01333 | Cmo-Chr7:7517223 | 0 | transposed | |
Cmo09g00200 | Cmo-Chr9:899338 | Cmo07g01333 | Cmo-Chr7:7517223 | 3.40E-09 | transposed | |
Cmo14g00933 | Cmo-Chr14:4953498 | Cmo07g01333 | Cmo-Chr7:7517223 | 1.62E-25 | transposed | |
Cmo03g00108 | Cmo-Chr3:1529840 | Cmo07g01333 | Cmo-Chr7:7517223 | 2.59E-179 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g01333 | K16570 | - | csv:101210691 | 1531.54 |