Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01333 ATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCCTTCAATTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGCTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCAGTCGCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCATTCTTACGATTCATGGGCGACGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGCCGAATATGGAAGGAAGAATGAGAATGAGAACGAGGACGATGACGATGACGATGCCACGGTGTTGAGCTGGATTCATTCATACGATGATCACATGATGAAATCTTTGAACATTGGTTTGAAGGCAGCCAATACCAAACAGTTGTATTTTGTTGAAATCCATTACACCCATGCCTTTCCCCTCCCTTGCTCCCATTCTCTCTTTCTCTCTCGTACCTTCTTCATTTCTCCCTCTAAAATGGAAGAAGCTGACCCCAGCAAGGTTCTTGATCTCATCAAAGAGCTTGTTCTTCGTCTTCTTTCTCACAATCCCACCTCCGATTCCATCTCTACCTCCTCCCATTTCGACAAATCCCTTCGCTATGCAATTCGCATTCTCACTAGTCGAATGACTCCCTCCATTGCTCCTGATGCTGCCGCCATCGCTGAGTCCATCAAGCGCAGGCTCGCCACCGAGGGTAAGTCTTCTCAGGCCCTCACTTTTGCTGATCTTTATACTAAATTTGCATCCAAAACCGGCCCTGGGAGTGTAAATAACAAATGGGCTGTGCTTTATTTGATTAAAATTGTGGCGGAGGATCGGAAATGTAAACGGACCCAGTTTGAATCTTCAATGCTTTTGCCTAATTTAGTAGCGAGTGATCCTGTGTTAGGAAAGAATTCTGGGGGTTTACGGCCGTGTGAGGAGTGGCAGAAGGGGGTTTTGTTGGTTTCAAAAGACCCTGAAAATCTTCGCGATATTGCTTTCAAGGAGTTTGCTAATTTGCAAAAGGAGGAAAATGAAGTGACTGAAGAGGCTTTGGTGAGGGATGTATTGTATGCTTGTCAAGGAATTGATGGGAAGTATGTGAAATTTGACAACAATGCTGATGGGTATGTTTTGTCCAATTTAGTTAAGGCTCCCAGGGCAACTAGGACGACGGTTCGCAAGCTCGGTGAAATCGGGTGGCTGTTTAGGAAGGTTAAAGGTTATATCTCGGAAAGTATGGAACGTTTTCCAGCTGAAGATGTTGGAACTGTTGGACATGCTTTTTGTGCTACATTGCAGGATGAGCTTTCGGAATACTATAAACTGTTGGCAGTTCTCGAAGCTCAGTCGATGAATCCGATACCTATGATTTCGGAGACAGCAAGTTCAGGAAACTATCTCTCACTAAGGAGATTGATAGTCTGGCTTTCTGAGCCAATGGTGAAAATGAGGTTGATGGCTGTATTGGTCGATAAGTGTCGAGTCTTGAAGGGTGGGGCGATGGCTGGGGCTATCCATTTACATGCTCAGCATGGTGACCCGTTGGTGCTTGAGTTCATGAGTCGTTTGCTGCGGCGTGTATGCTCTCCACTTTTTGAGATGGTGAGGAGTTGGGTTTTGGAAGGGGAGCTAGAAGACATTTTTGCTGAGTTTTTCGTTGTTGGGCAGCAAGTGAAGGCCGAATCGCTCTGGAGGGAAGGTTATAGGCTTCGTACCAGCATGCTTCCATCTTTCATTTCGCAATCTCTAGCCCGACGTATATTGAGGACTGGGAAATCGATTAATTTCCTTCGTGTTTGTTGCGAGGATATGGGATGGGCTGATGCTGCAACAGAAGCAGCAGTAGCCGCTGGGACCTCGACCCAAAGGGGAGGTCTCGGATATGGCGAAACCGATGCTCTTGAATCTTTGGTAGATGGAGCAGCAAAAAGAATAGACAAACACTTGTTGGATGTCATACACAAGCGGTATAAGTTCAAAGACCATTGTCTAGCAATTAAGCGCTATTTGCTATTAGGACAAGGTGATTTTGTCCAATATCTGATGGATATTGTTGGGCCAGAGCTTTCTGAGCATGCCAATGCTATTAGCTCGTTTAAGTTATCCGGTCTCCTCGAAACCGCGATTCGTTCTTCCAATGCCCAGTATGATGATCCCGACATCTTGGATAGATTAAAGGTTAAGATGATGCCTCATGGAACCGGAGATCGGGGTTGGGATGTATTTTCATTGGAATATGAGGCAAGAGTTCCATTAGATACTGTATTTACAGAGTCTGTCATGTCAAAATATTTAAGGATCTTTAATTTCCTATGGAAGCTTAGACGGGTCGAGCATGCGCTTATGGGTACTTGGAAGACAATGAAGCCAAACGGCATCACGTCGTGTTCATTGACTAAGCTGCACCATGGGGTTAAGAAGCAATTGCTCTCGACATTAAGGCGATGCCAGGTCCTTTGGGTCGAGATGAATCATTTTGTTACGAACTTGCAGTACTACATAATGTTTGAAGTCTTGGAAGTATCATGGTCTGATTTTTCAAATGAAATGGAAGCAGCAATGGATTTGGATGATTTACTTGCAGCTCATGAAAAGTATCTTCATTCAATATTTGAGAAGTCTCTTCTTGGAGAACAATCTCAGACACTTTGCAAGTCGCTTTTTGGCTTATTTGATCTAATATTACGATTTCGAAGTCACGCCGACAGATTATACGAGGGAATACATGAATTACAATGCAGAACAATAGAATCATCTTTACCCTCCAGAGACAAGAGTAAGAAAAATCGTTCAACAGAAAAATCTTTCGACACGTCGTCGTGGATAGCTGATGGCGAGAATGCTCTAACACGACGTGCTGGTGAATTTCTTCGGAATGTTGAGCAAGATCTAGCTGCATTAGCCAAACAGTATTCGTCATTGCTCGAGGGGTTCATTTCTCAGCTGCCTTTGCAACAGCATGTTGATTTGAAGTTTCTTCTTTTCCGCCTCGACTTTACGGAATTTTACAGCCAGTTACAACCTCATGTGTAG 3585 44.63 MAPGSSTCKKVDSHPSISGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKAEYGRKNENENEDDDDDDATVLSWIHSYDDHMMKSLNIGLKAANTKQLYFVEIHYTHAFPLPCSHSLFLSRTFFISPSKMEEADPSKVLDLIKELVLRLLSHNPTSDSISTSSHFDKSLRYAIRILTSRMTPSIAPDAAAIAESIKRRLATEGKSSQALTFADLYTKFASKTGPGSVNNKWAVLYLIKIVAEDRKCKRTQFESSMLLPNLVASDPVLGKNSGGLRPCEEWQKGVLLVSKDPENLRDIAFKEFANLQKEENEVTEEALVRDVLYACQGIDGKYVKFDNNADGYVLSNLVKAPRATRTTVRKLGEIGWLFRKVKGYISESMERFPAEDVGTVGHAFCATLQDELSEYYKLLAVLEAQSMNPIPMISETASSGNYLSLRRLIVWLSEPMVKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMSRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGQQVKAESLWREGYRLRTSMLPSFISQSLARRILRTGKSINFLRVCCEDMGWADAATEAAVAAGTSTQRGGLGYGETDALESLVDGAAKRIDKHLLDVIHKRYKFKDHCLAIKRYLLLGQGDFVQYLMDIVGPELSEHANAISSFKLSGLLETAIRSSNAQYDDPDILDRLKVKMMPHGTGDRGWDVFSLEYEARVPLDTVFTESVMSKYLRIFNFLWKLRRVEHALMGTWKTMKPNGITSCSLTKLHHGVKKQLLSTLRRCQVLWVEMNHFVTNLQYYIMFEVLEVSWSDFSNEMEAAMDLDDLLAAHEKYLHSIFEKSLLGEQSQTLCKSLFGLFDLILRFRSHADRLYEGIHELQCRTIESSLPSRDKSKKNRSTEKSFDTSSWIADGENALTRRAGEFLRNVEQDLAALAKQYSSLLEGFISQLPLQQHVDLKFLLFRLDFTEFYSQLQPHV 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7517223 7524709 - CmoCh07G013330.1 Cmo07g01333 386641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01333 1194 CDD RING-HC_SIAHs 56 94 - -
Cmo07g01333 1194 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 375 1182 - -
Cmo07g01333 1194 SUPERFAMILY RING/U-box 52 98 - -
Cmo07g01333 1194 Gene3D - 844 1186 IPR042241 -
Cmo07g01333 1194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 110 IPR013083 -
Cmo07g01333 1194 Pfam Gamma tubulin complex component C-terminal 845 1187 IPR040457 GO:0043015
Cmo07g01333 1194 Coils Coil 613 633 - -
Cmo07g01333 1194 Pfam Gamma tubulin complex component N-terminal 536 839 IPR041470 -
Cmo07g01333 1194 MobiDBLite consensus disorder prediction 20 34 - -
Cmo07g01333 1194 Coils Coil 1141 1161 - -
Cmo07g01333 1194 Pfam Seven in absentia protein family 100 269 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo07g01333 1194 SUPERFAMILY TRAF domain-like 111 268 - -
Cmo07g01333 1194 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 273 IPR008974 GO:0005515
Cmo07g01333 1194 MobiDBLite consensus disorder prediction 1 34 - -
Cmo07g01333 1194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 166 IPR013083 -
Cmo07g01333 1194 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
Cmo07g01333 1194 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Cmo07g01333 1194 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 375 1182 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00109 Cmo07g01333 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00708 Cmo-Chr6:3593397 Cmo07g01333 Cmo-Chr7:7517223 7.82E-28 dispersed
Cmo07g01333 Cmo-Chr7:7517223 Cmo18g00871 Cmo-Chr18:10014647 1.04E-134 dispersed
Cmo16g01019 Cmo-Chr16:7039727 Cmo07g01333 Cmo-Chr7:7517223 8.37E-22 dispersed
Cmo02g01212 Cmo-Chr2:7288344 Cmo07g01333 Cmo-Chr7:7517223 3.62E-12 transposed
Cmo03g00109 Cmo-Chr3:1532343 Cmo07g01333 Cmo-Chr7:7517223 0 transposed
Cmo09g00200 Cmo-Chr9:899338 Cmo07g01333 Cmo-Chr7:7517223 3.40E-09 transposed
Cmo14g00933 Cmo-Chr14:4953498 Cmo07g01333 Cmo-Chr7:7517223 1.62E-25 transposed
Cmo03g00108 Cmo-Chr3:1529840 Cmo07g01333 Cmo-Chr7:7517223 2.59E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01333 K16570 - csv:101210691 1531.54