Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g01338 | ATGGCTGACCCATATTCCAATTCATTAGCTAGTCTTCTAAAATTCAGCTCCCTCCATCACCATTTCCCACAATCACAACCTTCCCCATCTCCCTCACACCTCAATATGTCTCTCAATTGCCTTCCATATCCTTACTTGGGTTCGGGTTCGGGTTCAGGTTCAGGGTCCGGGTCAGGTTCGCCTCCGCCATCGTCGCCACCGCTCCGCGAGGCTCTACCGCTTCTCGGGTTGATATCTCCCCCCGAGCAACGGCAGGAGCAAGAGGAAGAAGACGATGGCGGAGACGACGAGGGCAACGATGAGTCGGTGACCGTGGCACTCCACATAGGGCTACCTAGCCCTAGCACAGTGGAGATGGGTTCATCTGAGATTGATCATAGTAATAATAATGATAATCTTGATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTACTCAAATCCTCATTGGTCCTACACAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCACGGCTCTCAGTACAGAAAAGGCCCAGAATCCCTGCGAGGCACGCAGCCAACGGGCATGCTAAGGCTACCTTGCTACTGCTGCGCGCCAGGGTGCCGCAACAACATCGACCACCCTCGAGCCAAGCCACTCAAAGACTTTAGAACTCTCCAAACACACTACAAGCGCAAGCACGGGCTCAAGCCATTTACGTGCCGCAAGTGCGGTAAGGCATTCGCCGTGCGAGGAGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCGGATTTCAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCATGCCGCCTACGGTGTCGGCGGGGTCGACGGGTTCGGAGACGAGGAGGAGGACGACCCCGCTTCGGAAGTCGAGCAGGATAACAACGAGTGA | 984 | 53.35 | MADPYSNSLASLLKFSSLHHHFPQSQPSPSPSHLNMSLNCLPYPYLGSGSGSGSGSGSGSPPPSSPPLREALPLLGLISPPEQRQEQEEEDDGGDDEGNDESVTVALHIGLPSPSTVEMGSSEIDHSNNNDNLDDFGQSTKTLIKGQYWIPTPTQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGVGGVDGFGDEEEDDPASEVEQDNNE | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7574902 | 7577381 | - | CmoCh07G013380.1 | Cmo07g01338 | 386646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g01338 | 327 | MobiDBLite | consensus disorder prediction | 305 | 327 | - | - | |
| Cmo07g01338 | 327 | MobiDBLite | consensus disorder prediction | 308 | 327 | - | - | |
| Cmo07g01338 | 327 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 163 | 190 | IPR013087 | - | |
| Cmo07g01338 | 327 | MobiDBLite | consensus disorder prediction | 85 | 99 | - | - | |
| Cmo07g01338 | 327 | MobiDBLite | consensus disorder prediction | 20 | 37 | - | - | |
| Cmo07g01338 | 327 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 247 | 267 | IPR013087 | - | |
| Cmo07g01338 | 327 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 165 | 185 | IPR013087 | - | |
| Cmo07g01338 | 327 | Coils | Coil | 318 | 327 | - | - | |
| Cmo07g01338 | 327 | MobiDBLite | consensus disorder prediction | 20 | 71 | - | - | |
| Cmo07g01338 | 327 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02100 | Cmo-Chr4:13168839 | Cmo07g01338 | Cmo-Chr7:7574902 | 1.03E-105 | dispersed | |
| Cmo07g01338 | Cmo-Chr7:7574902 | Cmo20g00081 | Cmo-Chr20:418949 | 1.39E-127 | dispersed | |
| Cmo03g00099 | Cmo-Chr3:1387909 | Cmo07g01338 | Cmo-Chr7:7574902 | 4.27E-158 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10189 | None | None | None | None | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g01338 | - | - | bhj:120074233 | 495.352 |