Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01338 ATGGCTGACCCATATTCCAATTCATTAGCTAGTCTTCTAAAATTCAGCTCCCTCCATCACCATTTCCCACAATCACAACCTTCCCCATCTCCCTCACACCTCAATATGTCTCTCAATTGCCTTCCATATCCTTACTTGGGTTCGGGTTCGGGTTCAGGTTCAGGGTCCGGGTCAGGTTCGCCTCCGCCATCGTCGCCACCGCTCCGCGAGGCTCTACCGCTTCTCGGGTTGATATCTCCCCCCGAGCAACGGCAGGAGCAAGAGGAAGAAGACGATGGCGGAGACGACGAGGGCAACGATGAGTCGGTGACCGTGGCACTCCACATAGGGCTACCTAGCCCTAGCACAGTGGAGATGGGTTCATCTGAGATTGATCATAGTAATAATAATGATAATCTTGATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTACTCAAATCCTCATTGGTCCTACACAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCACGGCTCTCAGTACAGAAAAGGCCCAGAATCCCTGCGAGGCACGCAGCCAACGGGCATGCTAAGGCTACCTTGCTACTGCTGCGCGCCAGGGTGCCGCAACAACATCGACCACCCTCGAGCCAAGCCACTCAAAGACTTTAGAACTCTCCAAACACACTACAAGCGCAAGCACGGGCTCAAGCCATTTACGTGCCGCAAGTGCGGTAAGGCATTCGCCGTGCGAGGAGACTGGCGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCGGATTTCAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCATGCCGCCTACGGTGTCGGCGGGGTCGACGGGTTCGGAGACGAGGAGGAGGACGACCCCGCTTCGGAAGTCGAGCAGGATAACAACGAGTGA 984 53.35 MADPYSNSLASLLKFSSLHHHFPQSQPSPSPSHLNMSLNCLPYPYLGSGSGSGSGSGSGSPPPSSPPLREALPLLGLISPPEQRQEQEEEDDGGDDEGNDESVTVALHIGLPSPSTVEMGSSEIDHSNNNDNLDDFGQSTKTLIKGQYWIPTPTQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGVGGVDGFGDEEEDDPASEVEQDNNE 327
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 7574902 7577381 - CmoCh07G013380.1 Cmo07g01338 386646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01338 327 MobiDBLite consensus disorder prediction 305 327 - -
Cmo07g01338 327 MobiDBLite consensus disorder prediction 308 327 - -
Cmo07g01338 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Cmo07g01338 327 MobiDBLite consensus disorder prediction 85 99 - -
Cmo07g01338 327 MobiDBLite consensus disorder prediction 20 37 - -
Cmo07g01338 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 267 IPR013087 -
Cmo07g01338 327 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Cmo07g01338 327 Coils Coil 318 327 - -
Cmo07g01338 327 MobiDBLite consensus disorder prediction 20 71 - -
Cmo07g01338 327 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02100 Cmo-Chr4:13168839 Cmo07g01338 Cmo-Chr7:7574902 1.03E-105 dispersed
Cmo07g01338 Cmo-Chr7:7574902 Cmo20g00081 Cmo-Chr20:418949 1.39E-127 dispersed
Cmo03g00099 Cmo-Chr3:1387909 Cmo07g01338 Cmo-Chr7:7574902 4.27E-158 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10189 None None None None Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01338 - - bhj:120074233 495.352