Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01342 ATGGCGTCCCCTTTCAGACCGCCATTGTTGATATCCTTAGCCTTTGCTTTCTTCCTTTTGGGTTCTTCTTCGTCTGAGGAATCGACCCTTTTGGCCTTCAAATCTTCCATTGATGATTTGACGAACACCCTCTCGAACTGGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCGATCCATTTCTGTAACTGGACTGGGATTTCTTGTGTGAGTTCGTCATCGCCTTCTTCGCTTTCGGTTTCCGCCATTAATCTTCAGGGTTTGAATCTCTCCGGCGAAATTTCATCTTCCATTTGTGAGCTCCCTCGTTTGGTTCATCTTAATCTTGCGGATAATCAGTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCACCTCGTTGGAGAGTTTGAATCTGAGTAACAATCTCATTTGGGGGACGATCCCCGATCAGATTTCTCTGTTTCGTTCTTTGATTGTTCTTGATTTTGCGAAGAATCATATCGAGGGGAAAATCCCTGAGGGCATTGGGGCTTTGAAGAATCTTCAAGTTCTGAATCTAAGAAGCAACTTGATTTCTGGTAGAGTTCCTTCTGTTATCTTTCATAATCTTACTGAACTTACTGTTCTTGATTTGTCTGAAAATTCTTATCTGATGAGTGATATTCCTAATGAGATTGGGAAGCTTGTGAAGCTTCAAGAGCTATGGCTTCAAAGCTCTGGTTTCCATGGCGAAATCCCTTCTTCTTTGTTGGATTTGAGTAGTTTATCTGTTTTAGATCTTTCTCAGAACAATCTCACTGGAAAACTTCCTGACATGATGGGTTCTTCTCTGAATAATTTGGTGTTCTTTGATGTTTCTTTGAATAAGCTCATGGGATCTTTCCCAGATGGTTTTTGTAGTGGAAAATCTCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACCGGAACCTTGCCTGATTCCTTGAATAAATGCTTGAATCTTGAGAGATTTGAAGTTCAGAACAATGGGTTTTCAGGGGATTTTCCTAAATCATTATGGTCATTGCCTAAGATTAAGCTCATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCTGAATCTATATCAATGGCTGCTCATCTTGAGCAAGTTCAGCTTGATAACAATAGTTTTTCGAGTAAGATACCTCGAGGACTCGGGTCGATTCGGAGCTTATACAGATTCTCTGCGTCGCTCAACCTTTTTTATGGTGAATTGCCATTGAACTTCTGTGATTCGCCATTGATGAGTATCATTAATCTGTCCCGTAATTCTCTTTCGGGACGGATTCCCGAGCTGAAGAACTGCAAGAAACTTGTCTCTTTGTCCTTAGCAGGCAATAGTTTTACTGGAGTAATACCTACTTCCCTTGCTGATCTACCTGTATTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCGAGGACTCGAAAACTTAAAGCTTGCGCTGTTTAACGTTTCGTTCAATCAACTATCGGGTGCTGTTCCGTTCTCTTTGATTTCGGGGCTACCTGCTTCGTTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCATGTTCTCATGGCCATCCAACAAACCATGTGTCTGGACTTAAGAAAATGACATGTGCTCTCATCTCTATAGCTTGTGTTCTAGGAGTTATGAGCTTAGCTGCTGGTTTCTTTCTGTATTACCGGTCGTTCAAGTCGAAATCCCGTGTCGATAACTGGCACTCGGTCTACTTTTACCCTCTTAGAATCAGTGAACATGAGTTGATCATGGGTATGAATGAGAAAACTGCACAAGGACATGGAGGAGCTTTTGGCCGAGTGTTCGTTTTAAGCTTGCCGAGCCGTGAACTGATTGTCGTTAAGAAACTGGTTAACTTTGGGAGTCGTTCGTGGAAATCGTTGAAAGCCGAGGTCGAGACGTTGGCCAAGATCAGGCACAAGAACATCATCAAAATTCTGGGGTTTTGCTACTCTGATGATGCCATTTTTCTGATCTATGAATTCTTACACAAAAAAAGCTTGGCTGACTTGATTTGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGACTGAGAATCGCCATTGAGGTTGCTCAAGGACTAGCTTACCTTCACAAGGACTGTGTCCCTCATTTACTTCATCGAAACGTCAAATCATCGAACATTCTATTGGATGCTGACTTTGTCCCGAAGCTCACGGATTTCGCTCTTCACCAGATCGTTGGAGAATCGGCATTTCACTCGACTGTGGCTTCGGAATCTGCTCATTCCTGCTATATTGCACCAGAGTATAAATACAACAAAAAAGCGACAGAGCAAATGGATGTGTACAGCTTTGGTGTCGTGTTGCTAGAATTGGTGACCGGGAGACAAGCCGAGCGATCGGAATCGACCGACTCTCTCGATGTTGTCCAGTGGGTTAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTGTCGGAGCAATCCCAACGAGAGATGCTGGAAGCTCTAGACATTGCCCTTCAATGCACTTCCATGATGCCCGAAAAACGACCATCGATGCTGGAAGAGAGTTTTTGGTTGAGAGATTGCAATGTTTGGGACATGTGGTATGGTAGTAAATACAAGATTTTGTTCCAAGTTATTTTTAAATTTTTATTTTCAGATAGATGCTTCAATTTTGGTGAAACTCCGAATGTGGATCTTCCGGCGACGGACAAAGAAGTCGTACCGGAGAAGATTGAAGATGAAGAGATCGACGAGCCTTTGATTCACTGCGAGCTTTGCGATGCGGAACTTGTTCATAAACTCGCTCAGGTTCTCCTTCCTGGATTGTCAACCGCGTGCGTCGATAACACGAGTGGCGATATCTTTCGAACCCCTGGTTCCGTGGCTGCCGAAATGAGGAAAGAAATGGTGGATTATATTACTATGAGGAGCGAAATTTGTGTTGCGGAATCCATAATTTTGGATAATGCTCCGGATGCTGAGGTATCTGATCATCCCTACGATATTATCTCTGATTTTGTTGAGGATTTTGCTGCTACGAAGAGAAATTTGTTTAGTAGAGTTTCGGGATGGGTTCTAAGTGAGAAAAGAGAGGATAGGATTGATGATTTTGTTCAAGAAATGGATGTTAATGGTTTTTGGCCGCTTGATAGGAGAGAAGCAATTGCTCAAGTTCTGCTTAAGAATGTAGATTTTAAGAACGAGTTTCATTGTGACCAGAAATTTCACTCTGTAGAAGAGTTAGCTGAACATGTTGTAAACTGTGGATTTAGGTCTCTAATCTGCACAAATGAAGGCTGCTGTGCTACATTTTGTGCAAACCACGCAGAACAGCATGATTCAATTTGCCCCTTCAAGATAATTCTGTGTGAACAGAAGTGTTCTGCCTTCATTATGAGACGCGAAATGGATCGCCATTGCATAACTGTTTGTCCTATGAAGCTTGTGAACTGCCCCTTCCATAATTTGGGTTGTCAATCCCCTGTTCCTTACAGTTTGATATCGCAGCATTGTTCAGAGAGTTTTGATTCTCATTTGCTGCTTATTCTTCACTCTGTTCACAAGGAGGCAAATGAAGAGACTCTTAAACATAGACGGCAACAGCTTGAAGAGGCATCATCACTTGACTACCTTAGAGGGCTCCAAAATCTGCGATTGTTAACCTCGAAAATCAAAGAACTGGATTCTAAGCTAGGACCATTAGTAGTCATTGGCACGAAGGAGGACACTGAAGAAGCGAAGGACGATGCGTCTAGTAAAACTGATGAAGAGAAGGACAAGTCTAATGCAACGGACGAAAAGAAGGGCGTGCCTAATGCAACAGAAGAAACGAAGGACGACGCATCTATTGTAACAACTGAAGAACCGAACGATGCTTCTAAGGCCTTGGAAGAAACGGAGGATGCTTCTAAGACAACGGAAGAACCGAACGATGCTTCTAAGGCAACGGAAGAAACGAAGAGCGAAGCAGCCTTGGCTTTGGCAAAGAAGAAGTCCATATTAACATCCACTGGGTCAGTTTCTTTCTCTCCTAGCTCTTTCTTATGCAGTTCTATTCATATTTCCCAGTGCAAGCCAAATTTCTTCCAAACAGATACTGCAATCCCCCATCTCTTCCACTTTCTCCGTAACCGGCCGAGCTTCTTCCAGAATCGCCGTCTCCTCCCCCGCTGCATTGTCATAGCTCCATCCCTGGAACAATCCGTGGTTTTCTTCCATCCAGGTGATCAGTCGGATGTAATCGAGCTCCAAGACCACGGAGCGGGAACAGAAGATTCCTCAGTAGAATCGGTGCAGTTTCTTGAAGGTACGGTTGCTCGCCGGAAGCGGCGGATGTGTAGCCGTAAATACGATACTGGATCGGTCTAG 4404 43.39 MASPFRPPLLISLAFAFFLLGSSSSEESTLLAFKSSIDDLTNTLSNWVSSSSSSSSSPIHFCNWTGISCVSSSSPSSLSVSAINLQGLNLSGEISSSICELPRLVHLNLADNQFNQPIPLHLSQCTSLESLNLSNNLIWGTIPDQISLFRSLIVLDFAKNHIEGKIPEGIGALKNLQVLNLRSNLISGRVPSVIFHNLTELTVLDLSENSYLMSDIPNEIGKLVKLQELWLQSSGFHGEIPSSLLDLSSLSVLDLSQNNLTGKLPDMMGSSLNNLVFFDVSLNKLMGSFPDGFCSGKSLVSLSVHTNFFTGTLPDSLNKCLNLERFEVQNNGFSGDFPKSLWSLPKIKLIRAENNGFSGEIPESISMAAHLEQVQLDNNSFSSKIPRGLGSIRSLYRFSASLNLFYGELPLNFCDSPLMSIINLSRNSLSGRIPELKNCKKLVSLSLAGNSFTGVIPTSLADLPVLTYLDLSDNNLTGSIPRGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSHGHPTNHVSGLKKMTCALISIACVLGVMSLAAGFFLYYRSFKSKSRVDNWHSVYFYPLRISEHELIMGMNEKTAQGHGGAFGRVFVLSLPSRELIVVKKLVNFGSRSWKSLKAEVETLAKIRHKNIIKILGFCYSDDAIFLIYEFLHKKSLADLICRNDSCLNWNVRLRIAIEVAQGLAYLHKDCVPHLLHRNVKSSNILLDADFVPKLTDFALHQIVGESAFHSTVASESAHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGASQVLDPSVSEQSQREMLEALDIALQCTSMMPEKRPSMLEESFWLRDCNVWDMWYGSKYKILFQVIFKFLFSDRCFNFGETPNVDLPATDKEVVPEKIEDEEIDEPLIHCELCDAELVHKLAQVLLPGLSTACVDNTSGDIFRTPGSVAAEMRKEMVDYITMRSEICVAESIILDNAPDAEVSDHPYDIISDFVEDFAATKRNLFSRVSGWVLSEKREDRIDDFVQEMDVNGFWPLDRREAIAQVLLKNVDFKNEFHCDQKFHSVEELAEHVVNCGFRSLICTNEGCCATFCANHAEQHDSICPFKIILCEQKCSAFIMRREMDRHCITVCPMKLVNCPFHNLGCQSPVPYSLISQHCSESFDSHLLLILHSVHKEANEETLKHRRQQLEEASSLDYLRGLQNLRLLTSKIKELDSKLGPLVVIGTKEDTEEAKDDASSKTDEEKDKSNATDEKKGVPNATEETKDDASIVTTEEPNDASKALEETEDASKTTEEPNDASKATEETKSEAALALAKKKSILTSTGSVSFSPSSFLCSSIHISQCKPNFFQTDTAIPHLFHFLRNRPSFFQNRRLLPRCIVIAPSLEQSVVFFHPGDQSDVIELQDHGAGTEDSSVESVQFLEGTVARRKRRMCSRKYDTGSV 1467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7608369 7616322 + CmoCh07G013420.1 Cmo07g01342 386650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01342 1467 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 865 - -
Cmo07g01342 1467 ProSiteProfiles Protein kinase domain profile. 602 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01342 1467 Gene3D Ribonuclease Inhibitor 23 192 IPR032675 -
Cmo07g01342 1467 SUPERFAMILY L domain-like 25 294 - -
Cmo07g01342 1467 Pfam TRAF-type zinc finger 1124 1182 IPR001293 GO:0008270
Cmo07g01342 1467 Gene3D Ribonuclease Inhibitor 193 270 IPR032675 -
Cmo07g01342 1467 Pfam Protein kinase domain 611 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01342 1467 Gene3D Phosphorylase Kinase; domain 1 594 677 - -
Cmo07g01342 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1123 1188 IPR013083 -
Cmo07g01342 1467 Gene3D Ribonuclease Inhibitor 271 539 IPR032675 -
Cmo07g01342 1467 ProSiteProfiles Leucine-rich repeat profile. 465 488 IPR001611 GO:0005515
Cmo07g01342 1467 SUPERFAMILY L domain-like 214 523 - -
Cmo07g01342 1467 Coils Coil 1252 1272 - -
Cmo07g01342 1467 Gene3D Transferase(Phosphotransferase) domain 1 678 875 - -
Cmo07g01342 1467 SMART LRR_typ_2 463 487 IPR003591 -
Cmo07g01342 1467 SMART LRR_typ_2 247 271 IPR003591 -
Cmo07g01342 1467 SMART LRR_typ_2 173 197 IPR003591 -
Cmo07g01342 1467 SMART LRR_typ_2 101 125 IPR003591 -
Cmo07g01342 1467 SMART LRR_typ_2 126 149 IPR003591 -
Cmo07g01342 1467 SMART LRR_typ_2 198 223 IPR003591 -
Cmo07g01342 1467 PANTHER OSJNBB0022F23.6 PROTEIN 8 865 - -
Cmo07g01342 1467 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Cmo07g01342 1467 SUPERFAMILY Protein kinase-like (PK-like) 611 880 IPR011009 -
Cmo07g01342 1467 MobiDBLite consensus disorder prediction 1254 1330 - -
Cmo07g01342 1467 Pfam Leucine rich repeat N-terminal domain 25 69 IPR013210 -
Cmo07g01342 1467 MobiDBLite consensus disorder prediction 1254 1331 - -
Cmo07g01342 1467 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Cmo07g01342 1467 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Cmo07g01342 1467 ProSiteProfiles Zinc finger TRAF-type profile. 1124 1175 IPR001293 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00091 Cmo07g01342 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01342 Cmo-Chr7:7608369 Cmo16g00796 Cmo-Chr16:4048232 6.60E-143 dispersed
Cmo07g01342 Cmo-Chr7:7608369 Cmo07g01343 Cmo-Chr7:7619545 8.25E-16 tandem
Cmo03g00092 Cmo-Chr3:1318734 Cmo07g01342 Cmo-Chr7:7608369 0 transposed
Cmo03g00091 Cmo-Chr3:1313763 Cmo07g01342 Cmo-Chr7:7608369 6.31E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74500 PF00069 Pkinase 9.90E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01342 - - csv:101222175 1462.2