Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01352 ATGCCCTCCTCCTCATTTCCTTCCTTCCTCACCTTCTTCTCCTTCCTCATTTCCCTCTCTTCCTCTCTCAACTCCGATGGCCTCTCCCTTCTCGCCCTCAAGGCCGCCATTGAAACCGACCCATCTCACCTCCTCGCCTCATGGTCCGACTCCGACTCCACCCCATGCCACTGGCCTGGAATCCTCTGCACCCGCGACCGAGTCACCCACCTCTCTCTTACCAACAAAGGCCTCACCGGCTACATCCCTTCGGAGCTCGGCCTCCTCGATTCCCTCCAGCGCCTCAGCCTCGCTTTCAACAATTTCTCTAAACCGATTCCGGTTCATCTCTACAACGCCACCAACCTCATCTTCCTCGACCTCTCTCACAACTCCCTCTCCGGTCCGGTTTCGGATCAAATCGGCGAACTCAGGAATCTCCGGCATCTCGATTTATCCTCTAATTCCCTCAATGGGTCTCTCCCGAAGCGGCTGACGGAGTTGACCGAACTTGTCGGGACTCTCAATTTGTCCTACAATCAATTCTCCGGCGAGGTTCCGCCGTCGTTTGGGAACCTCCCGCTGATTGTGAATCTGGATGTTCGTCACAATAACCTCACCGGAAAGATTCCGCAGGTGGGTTCGTTGTTGAATCAAGGCCCGACGGCTTTCTCCGGCAACCCAAGTCTTTGCGGGTTTCCGTTACAGACGCTATGTCCAGAAGCTCAGAACCCGAATGTTATCCCTGAGAATCCGCAGAATCCCAAGTCGTTGAACGGTAATTTTCAAGGATACGGCGGAGGGAGAGCTACAAGGGGGAGTGGCGCCGCTGCGACGGTGGCAGTGGTGTCATCAATATTCGCGGTGATGGGGGTTGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAGGCGGAAGTGGGGAAGCGAGATGAGGGCAAATCGGGAAAAGGGAGTCCGGAGGAGAACAGTGAAGGGGATTTGGAAGGGCAAGATGGTAAATTCGTAGTGATCGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTATAAGGTCGTGGCTGGGCGGGGATCAGGTGCGGCCGCGAGTATTGTAGCTGTAAGGAGACTTAACGATGGTGATGCCACGTTGACGTTCAAAGATTTTGAGTATGAGATGGAGTCCATCAGTAGGGTTCACCATCCCAACATCCTACGGTTGAGAGCTCATTACTATGCAAGTGATGAGAAATTGGTGGTCACTGATTTCATCAACAATGGAAGCTTGCACTCTGCCTTACATGGAGGCCCCTCCAGTTCTCTGTCACCTCTGCCATGGTCTGCAAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATATATTCATGAATTCGGTGCTCGGAAGTACGTACATGGAAACGTAAAATCGACGAAGATTCTTCTCGACGACGATCTTGAGCCTTACGTTTCAGGTTTCGGACTCGCTCGTCTCAGCCAAGGAACATCCAAAAAGTTGAGCTCAAGCCAGAATATGATCACCACCTCAATCATGGGGCCAAGCATGACAACTCCCTCAGCAATGTACTTAGCGCCCGAGGTTCGTGAGTTTGGAGGGAAGTACACTCAGAAATGCGACGTCTATTCATTTGGTATTGTCCTTCTTGAGCTTTTGAGCGGTCGATTACCTAATGCAGGCTCGGAGACCGATGGGGGGAAGGGGTTGGAATGTTTTGTGAGGAAGACATTTCAAGAAGAGCGCCCCTTGACCGAGATTATAGACCCGGCACTCGTGCCGGAGATTTATGCCAAGAAACAAGTGGTTTCGACATTTCACATTGCGCTGAATTGCACAGAGCTTGATCCCGAGCTTCGTCCTCGAATGCGATCGGTTTCAGAGAGTCTCGATCGAATCAAATCTCAATGA 1932 52.12 MPSSSFPSFLTFFSFLISLSSSLNSDGLSLLALKAAIETDPSHLLASWSDSDSTPCHWPGILCTRDRVTHLSLTNKGLTGYIPSELGLLDSLQRLSLAFNNFSKPIPVHLYNATNLIFLDLSHNSLSGPVSDQIGELRNLRHLDLSSNSLNGSLPKRLTELTELVGTLNLSYNQFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTLCPEAQNPNVIPENPQNPKSLNGNFQGYGGGRATRGSGAAATVAVVSSIFAVMGVVSLTVWWFRRKAEVGKRDEGKSGKGSPEENSEGDLEGQDGKFVVIDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSGAAASIVAVRRLNDGDATLTFKDFEYEMESISRVHHPNILRLRAHYYASDEKLVVTDFINNGSLHSALHGGPSSSLSPLPWSARLKIAQGAARGLAYIHEFGARKYVHGNVKSTKILLDDDLEPYVSGFGLARLSQGTSKKLSSSQNMITTSIMGPSMTTPSAMYLAPEVREFGGKYTQKCDVYSFGIVLLELLSGRLPNAGSETDGGKGLECFVRKTFQEERPLTEIIDPALVPEIYAKKQVVSTFHIALNCTELDPELRPRMRSVSESLDRIKSQ 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7651621 7655864 + CmoCh07G013520.1 Cmo07g01352 386660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01352 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 643 - -
Cmo07g01352 643 MobiDBLite consensus disorder prediction 301 322 - -
Cmo07g01352 643 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 8 643 - -
Cmo07g01352 643 Pfam Protein tyrosine and serine/threonine kinase 349 637 IPR001245 GO:0004672|GO:0006468
Cmo07g01352 643 PRINTS Leucine-rich repeat signature 116 129 - -
Cmo07g01352 643 PRINTS Leucine-rich repeat signature 137 150 - -
Cmo07g01352 643 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cmo07g01352 643 Gene3D Ribonuclease Inhibitor 22 165 IPR032675 -
Cmo07g01352 643 Gene3D Transferase(Phosphotransferase) domain 1 425 643 - -
Cmo07g01352 643 Gene3D Phosphorylase Kinase; domain 1 327 424 - -
Cmo07g01352 643 Gene3D Ribonuclease Inhibitor 166 232 IPR032675 -
Cmo07g01352 643 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Cmo07g01352 643 ProSiteProfiles Protein kinase domain profile. 343 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01352 643 SUPERFAMILY Protein kinase-like (PK-like) 348 637 IPR011009 -
Cmo07g01352 643 SUPERFAMILY L domain-like 24 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01352 Cmo-Chr7:7651621 Cmo18g00696 Cmo-Chr18:8827292 3.56E-172 dispersed
Cmo03g00082 Cmo-Chr3:1229965 Cmo07g01352 Cmo-Chr7:7651621 2.80E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74501 PF07714 PK_Tyr_Ser-Thr 2.10E-27 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01352 - - csv:101212426 1001.5