Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01364 ATGCTAAGGGCAGCTTCGTTATTGCAATTCAGGTGGATTTCTGCTCCCCCATGGGAGTCATATGCTTCTCTTCGTCCAACAATCATAGGATTTCGCCGTAATCGTAGAAAATTAGGGTTTCTTCTAAATTTCAAACCCTTAGAATCTGTTCGGTGCTCAACAATGACGATCACCCCGAAGATTTCCGTTAACGATGGCAACTTGGTGGTTCACGGAAAGACCATACTCACTGGAGTGCCTGACAACATTGTGCTGACCCCAGGATCAGGCCCTGGACTTGTTGCTGGTGCATTCATTGGTGCCACTGCCTCACACAGTAAAAGTCTGCACGTTTTCCCCATCGGTGTCTTAGAGGGTCAGCGCTTCCTGTGTTGTTTCCGTTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACGTCTGGGAAAGACATCCCTTTTGAGACCCAGTTCCTGCTCATGGAGAGCAAGGGTGCTGATGGGGAGGATCCTGATAATTCTTCAACCATCTACACTGTCTTCCTTCCTCTCCTTGAAGGCCAGTTCCGTGCTGCGCTGCAGGGCAATGACAAGAACGAGATGGAGATTTGCCTCGAGAGTGGAGATAATACTGTTGAGACCAACCAAGGACTCTCTCTGGTCTATATGCATGCTGGGACAAATCCCTTTGAAGTTATCAATCAAGCAGTGAAGGCTGTTGAAAATCATATGCAAACATTTCTACACAGAGAGAAGAAGAAGTTACCTTCCTTCCTCGACTGGTTTGGTTGGTGTACTTGGGATGCCTTTTACACCGATGTCACTGCTGAGGGTGTTGACGAGGGTCTCAGAAGCCTATCAGGCGGAGGGGCACCTCCAAAATTTTTAATCATAGATGATGGTTGGCAACAGATAGAGAGCAAACCAAAGGATGCTACTGATTGTGTTGTACAAGAAGGAGCACAGTTTGCGAGTAGGCTGTCTGGAATAAAAGAGAACCAAAAGTTTCAGAAAAATGGGAAAAACAATGTACAGGTCCCTGGCCTGAAGGTGGTTGTTGATGATGCCAAGCAACAACACAATGTGAAATTTGTGTATGCTTGGCATGCTTTAGCTGGTTATTGGGGTGGAGTGAAACCAGCAGGTCCAGGCATGGAGCACTACGAGTCTGCTTTGGCATACCCGGTCCAGTCACCGGGTATGTTGGGCAACCAACCAGACATAGTTGTAGACAGTCTGGCTGTTCACGGCATTGGCCTTGTGCATCCAAAAAAAGTCTTTAATTTCTATAATGAGCTTCATTCCTACTTGGCTTCATGTGGAGTGGATGGTGTAAAGGTTGATGTGCAGAACATTATCGAGACCCTCGGTGCTGGTTATGGTGGCAGGGTTCAACTCACTCGTAGCTACCATCAGGCCCTCGAAGCTTCTATTGCTCGAAACTTTACCGACAATGGATGTATTTCCTGTATGTGCCACAACACTGATGGTCTTTACAGTGCCAAACAGACTGCGGTCGTGAGAGCTTCTGATGACTATTACCCTCACGATCCTGCCTCCCACACCATTCATATTTCCTCTGTGGCTTACAATTCTCTTTTCCTTGGAGAATTCATGCAGCCTGACTGGGATATGTTCCATAGTTTACATCCCACAGCTGAGTATCATGGAGCTGCTCGTGCAATCGGTGGAGGTGCAATCTATGTCAGTGACAAGCCAGGCAACCACAACTTTGAGCTGTTGAGGAAGCTAGTTCTTCCCGACGGATCAGTTCTTCGTGCCCAGTTACCTGGACGACCGACGAGTGATTCTCTGTTCAACGATCCAGCTCGAGATGGAACCAGTCTACTCAAAATTTGGAATATGAACAAGTGCTCTGGTGTTGTTGGAGTATTCAATTGCCAAGGAGCTGGCTGGTGCAGGATCACAAAGAAGACTCGCGTTCACGACGAGTCTCCTGGTACCCTCACCGCCTCTGTCCGTGCAGCCGATGTCGATGCTATTTCGCAAATTGCTGGTGCCGATTGGAAGGGAGATACTATCGTTTACGCCTATCGATCAGGGGAGGTAGTTCGATTGCCAAAAGGCGCCTCGGTTCCAGTTACACTCAAAGTATTGGAATATGATCTTTTCCATATTTCCCCTCTAAAGGACATCACCTCGAACATCTCTTTCGCCCCAATTGGGCTGCTCGACATGTTCAACACTGGTGGTGCTATTGAGCAAGTCGATGTCCAATTGGTCGAACCAACGCCCGAGTTCAATGGTGAAGTTGCCTCCGAGCTGACAGGTTCTCTCCCCAACGATCGACGCCCGACAGCTACAATTACTCTAAAAGCCCGGGGATGTGGAAGGTTTGGCATTTACTCATCTCAACGACCTTTGAAATGTAGTGTAGACAAGGCCAATTCTGACTTTTCCTACGATGAGGCAACAGGGTTAGTCACATTTACGCTCCCTATCCCGACAGTAGAAATGTATAGATGGAGCATTGAAATTCAGGATCGAGCAGGATCTTCGAGTGGACCAGCTGCCATGGAGGTCGACGCTAATTCAGGGAAATCGTCGAAACAGATTGGGAGTGGTCAGGTTTGTCAGATCTGTAGCGATTCCGTCGGCACCACGGCCGATGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTTTGCCGTCCTTGTTACGAGTACGAGAGGAAAGATGGGAATCAGTCTTGTCCTCAGTGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAAGCAGTGGAAGATGGGGATGGTAATGGAGTGACAGGGGCTCAAGAAAGGCACCATAAGTTACCTGAGCGCACTCTTAGCTGGGATACCAACTATGATAAGGAGGGATCCTTTAATCATATTCCTTTGCTTACCACTGGACGATCTGTTTCTGGAGAACTATCAGCTGCATCTCCCGAGCGGCTCTCCATGGCATCTCCTGAAAGTGGGAGCAGGGCTAACTATAGAATCATGGATCAATCGAGAGATTCGGGATCGGCTAGGTTTGGCAATGTGGCTTGGAAAGAGAGAATTGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCGCCAATGAGTGTTAGTCATGCACCTTCTGAAGGTCGGGGTGGTGCAGATTTCGATGCCAGCACCGATGTCATGATCGATGATTCTTTACTAAATGATGAAGCCCGCCAGCCTCTTTCGAGGAAGGTTTCTATTCCGTCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGACTTGTTATTCTTTGCATCTTCTTGCACTACCGGATTACAAATCCAGTACCGAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAAATATGGTTTGCTGTATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCAGTCAATCGCGAGACGTATCTTGATCGACTTGCTCTACGATATGATCGTGAAGGAGAGCCATCCCAGTTGGCTGCTGTTGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAGCCTCCGCTTGTCACAGCTAATACGGTCCTATCAATTCTCGCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCTATGTTAACATTTGAAGCATTGTCTGAAACGTCAGAATTTGCCAGAAAATGGGTTCCTTTCTGCAAGAAATACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATCGATTACTTAAAGGACAAGGTTCACCCATCGTTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACACCATGGCCTGGAAATAACACTAGAGATCATCCAGGAATGATTCAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGAGGGTAATGAGCTTCCTCGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTTTCTGCTGTTCTTACCAATGGACCTTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTACGGGAAGCTATGTGCTTTATGATGGATCCTAATCTTGGAAAATCAGTGTGCTACGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGAAACGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCGGTTTATGTGGGAACGGGATGTGTCTTCAATCGAACTGCATTGTACGGCTATGAACCCCCCCTCAAGCCTAAGCACAGAAAACCCGGGGTCTTCTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGTTCTAAATCTAAAAGGAAGGATTCTGATAAAAAGCAATCAAATAAAAACGTCGATCCCACTGTGCCGATATTCAACCTCGAGGATATCGAGGAAGGTGTCGAAGGTGCTGGATTTGACGATGAGAAGTCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTGATGGAGAATGGTGGCGTTCCGCAGTCTGCCACCCCGGAATCTCTTCTTAAGGAAGCAATTCACGTCATCAGTTGCGGATACGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCACGCCCGTGGTTGGAGATCGATCTATTGCATACCTGACCGTCCTGCATTTAAAGGTTCTGCTCCTATTAATCTTTCCGATCGTCTAAACCAAGTGCTTCGATGGGCGCTAGGTTCGGTCGAAATTCTTTTCAGTCGGCATTGCCCAATGTGGTACGGTTATAGTGGACGCCTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATTACATCCATTCCTCTCCTTGCCTATTGTACCTTGCCTGCAATATGTCTGCTCACCGGAAAGTTCATCATTCCTCAGATTAGTAATCTTGCCAGTATTTGGTTCATTTCTCTCTTTCTTTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGCGTCGGAATCGATGAATGGTGGAGAAACGAGCAGTTTTGGGTTATCGGAGGTGTGTCGGCCCATCTGTTTGCCGTGTTCCAAGGTCTGCTTAAAGTTCTTGCTGGAATTGATACGAACTTCACGGTTACTTCGAAGGCATCCGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAATGGACCACTCTTCTCATTCCCCCAACTACTCTCCTCATTATCAACATAGTTGGTGTTGTTGCTGGAATTTCTTACGCCATTAACAGTGGCTATCAATCCTGGGGTCCCCTTTTCGGCAAGCTGTTCTTCGCTTTCTGGGTGATTATCCATCTGTATCCCTTCCTCAAGGGTCTGATGGGTCGCCAGAACCGAACTCCGACGATCGTGGTTGTATGGTCCATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATTGATCCCTTCACAACCCGAGTAACTGGCCCCGACGTCGAACAGTGTGGAATCAACTGCTAA 5664 46.77 MLRAASLLQFRWISAPPWESYASLRPTIIGFRRNRRKLGFLLNFKPLESVRCSTMTITPKISVNDGNLVVHGKTILTGVPDNIVLTPGSGPGLVAGAFIGATASHSKSLHVFPIGVLEGQRFLCCFRFKLWWMTQRMGTSGKDIPFETQFLLMESKGADGEDPDNSSTIYTVFLPLLEGQFRAALQGNDKNEMEICLESGDNTVETNQGLSLVYMHAGTNPFEVINQAVKAVENHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLRSLSGGGAPPKFLIIDDGWQQIESKPKDATDCVVQEGAQFASRLSGIKENQKFQKNGKNNVQVPGLKVVVDDAKQQHNVKFVYAWHALAGYWGGVKPAGPGMEHYESALAYPVQSPGMLGNQPDIVVDSLAVHGIGLVHPKKVFNFYNELHSYLASCGVDGVKVDVQNIIETLGAGYGGRVQLTRSYHQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAVVRASDDYYPHDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPTAEYHGAARAIGGGAIYVSDKPGNHNFELLRKLVLPDGSVLRAQLPGRPTSDSLFNDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCRITKKTRVHDESPGTLTASVRAADVDAISQIAGADWKGDTIVYAYRSGEVVRLPKGASVPVTLKVLEYDLFHISPLKDITSNISFAPIGLLDMFNTGGAIEQVDVQLVEPTPEFNGEVASELTGSLPNDRRPTATITLKARGCGRFGIYSSQRPLKCSVDKANSDFSYDEATGLVTFTLPIPTVEMYRWSIEIQDRAGSSSGPAAMEVDANSGKSSKQIGSGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVTGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVMIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGVFSSCFGKSKKKSSKSKRKDSDKKQSNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYSGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7723464 7735286 + CmoCh07G013640.1 Cmo07g01364 386672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01364 1887 Pfam Cellulose synthase 1159 1880 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo07g01364 1887 Pfam Zinc-binding RING-finger 853 923 IPR027934 -
Cmo07g01364 1887 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1278 1450 IPR029044 -
Cmo07g01364 1887 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1173 1691 IPR029044 -
Cmo07g01364 1887 MobiDBLite consensus disorder prediction 1460 1493 - -
Cmo07g01364 1887 SUPERFAMILY (Trans)glycosidases 250 577 IPR017853 -
Cmo07g01364 1887 PANTHER CELLULOSE SYNTHASE 847 1887 - -
Cmo07g01364 1887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 839 930 IPR013083 -
Cmo07g01364 1887 Pfam Raffinose synthase or seed imbibition protein Sip1 61 810 IPR008811 -
Cmo07g01364 1887 ProSiteProfiles Zinc finger RING-type profile. 857 903 IPR001841 -
Cmo07g01364 1887 CDD mRING-HC-C4C4_CesA_plant 855 905 - -
Cmo07g01364 1887 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 847 1887 - -
Cmo07g01364 1887 SUPERFAMILY RING/U-box 845 924 - -
Cmo07g01364 1887 Gene3D Aldolase class I 253 573 IPR013785 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00070 Cmo07g01364 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01089 Cmo-Chr1:9072177 Cmo07g01364 Cmo-Chr7:7723464 0 dispersed
Cmo01g01553 Cmo-Chr1:11951151 Cmo07g01364 Cmo-Chr7:7723464 0 dispersed
Cmo07g01364 Cmo-Chr7:7723464 Cmo09g00475 Cmo-Chr9:2136134 0 dispersed
Cmo09g01046 Cmo-Chr9:5609932 Cmo07g01364 Cmo-Chr7:7723464 0 dispersed
Cmo10g00563 Cmo-Chr10:2559679 Cmo07g01364 Cmo-Chr7:7723464 0 dispersed
Cmo11g00523 Cmo-Chr11:2549463 Cmo07g01364 Cmo-Chr7:7723464 0 dispersed
Cmo08g00518 Cmo-Chr8:3241989 Cmo07g01364 Cmo-Chr7:7723464 0 transposed
Cmo10g00086 Cmo-Chr10:382156 Cmo07g01364 Cmo-Chr7:7723464 0 transposed
Cmo17g01333 Cmo-Chr17:10447348 Cmo07g01364 Cmo-Chr7:7723464 0 transposed
Cmo03g00070 Cmo-Chr3:1074167 Cmo07g01364 Cmo-Chr7:7723464 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01364 K10999 - csv:101211779 2098.94