Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01365 ATGGCTGAAAGAGGAGGAGGAGACCGCGGTGGCTTCGGCAGAGGTTTTGGCGGCAGAGGTCGTGGTGGCGACCGTGGCCGTGGCCGTCGTCGTGCTGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTAGGGCGGCTCGTCAAGGAAGGTAAGATTCAGTCACTTGAACAGATTTACCTCCACTCTCTTCCTATCAAGGAGCACCAGATCGTTGATACTCTCATTGGACCTAGCCTCAAGGATGAGGTTATGAAGATCATGCCGGTGCAGAAACAGACCCGGGCCGGACAGAGGACCCGTTTTAAGGCCTTCGTTGTCGTCGGTGACGGCAATGGCCATGTTGGATTGGGAGTGAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGTTCGATTATATTGGCCAAGTTGTCGGTGATTCCTGTGAGGAGGGGTTACTGGGGTAACAAGATCGGGAAGCCTCATACTGTGCCTTGCAAGGTTACTGGAAAGTGTGGCTCTGTTACAGTCCGTATGGTTCCTGCTCCTCGTGGTGCTGGTATCGTCGCGGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCTTCCAGGGGATCAACTAAGACACTTGGAAACTTTGTGAAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAAGGAGACTCGCTTCACAAAATCTCCATTCCAAGAGCACACGGATCTGTTGGCTAAACCTACTGTGAAGGCATTGTTGTTGGATGATGCCGAGAGGCCCAGAATTTCTCAATCTCGTATCGAAAATCTGCTTCGTTTTGATTTGGGTATGGGAACTCCGGAATTCCCTAATCTTGGAAAGCATTGCAGCTTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAACTGATAGGCGTGATGTTACTGTTGTCATTTGTCCGCTCTGTGCCAAAGGAGTTCGTCTCATTCCCGATCAAGACCCGAACATTACGTGGGAGATTCACGTAAACACTGAATGTGATCCTTCAAATTATGATAAAGTCACAAAGAAGAAAAAGTGCCCAGTACCTGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATTAAGTGCCGGGATTGCTTGGTAGACCATTGTTTGAAGCACCGTTTTGGACCCGACCATAAGTGTTCGGGACCGAAAAAACCAGAACCAGCTGGCTTTCCATTTGTTGGTCTTCTAAGTCGAAGTAGAAAAGAAGAGAAGGGCCCTAAGAGAGCATTGCCCCCCACAACATCTTCCTCTAGTTGGACTACATCCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCGAGCATGACGAAGTTGTCGAATGAAATCAATCATGCTTGGAAAACAAAAAGCAGCAGCAGCAGCAGCAACGGAAGTGCAAATGGACAAGTCGAGCAATGTCCACAATGTGGTGCTAAGTTTTCGTCAGTTTCATCGTTAATAGACCATGTCGAAAAAGTCCACGAAAAGGGTGGCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTTGATCCTGTTGCGCTCGTGGAGCATATCGAGAGGGAGCATGGTGGTACTTCAAGAGCTTGA 1737 48.76 MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERPRISQSRIENLLRFDLGMGTPEFPNLGKHCSFEDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKTDRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRSRKEEKGPKRALPPTTSSSSWTTSLLNAASSVKASAEASMTKLSNEINHAWKTKSSSSSSNGSANGQVEQCPQCGAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIEREHGGTSRA 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7736340 7741815 + CmoCh07G013650.1 Cmo07g01365 386673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01365 578 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Cmo07g01365 578 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo07g01365 578 ProSiteProfiles Zinc finger C2H2 type domain profile. 549 577 IPR013087 -
Cmo07g01365 578 Gene3D - 146 239 IPR014721 -
Cmo07g01365 578 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
Cmo07g01365 578 MobiDBLite consensus disorder prediction 1 38 - -
Cmo07g01365 578 SMART c2h2final6 385 415 IPR013087 -
Cmo07g01365 578 SMART c2h2final6 511 534 IPR013087 -
Cmo07g01365 578 SMART c2h2final6 549 572 IPR013087 -
Cmo07g01365 578 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo07g01365 578 ProSitePatterns Zinc finger C2H2 type domain signature. 513 534 IPR013087 -
Cmo07g01365 578 ProSiteProfiles Zinc finger AN1-type profile. 381 431 IPR000058 GO:0008270
Cmo07g01365 578 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 269 - -
Cmo07g01365 578 SUPERFAMILY AN1-like Zinc finger 379 429 IPR035896 -
Cmo07g01365 578 TIGRFAM uS5_euk_arch: ribosomal protein uS5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Cmo07g01365 578 ProSiteProfiles Zinc finger AN1-type profile. 293 341 IPR000058 GO:0008270
Cmo07g01365 578 ProSitePatterns Zinc finger C2H2 type domain signature. 551 572 IPR013087 -
Cmo07g01365 578 Gene3D - 40 145 - -
Cmo07g01365 578 MobiDBLite consensus disorder prediction 443 462 - -
Cmo07g01365 578 SUPERFAMILY AN1-like Zinc finger 286 344 IPR035896 -
Cmo07g01365 578 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cmo07g01365 578 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Cmo07g01365 578 Gene3D - 286 347 IPR035896 -
Cmo07g01365 578 Pfam C2H2-type zinc finger 512 534 - -
Cmo07g01365 578 ProSiteProfiles Zinc finger C2H2 type domain profile. 511 534 IPR013087 -
Cmo07g01365 578 Gene3D - 367 433 IPR035896 -
Cmo07g01365 578 PANTHER RIBOSOMAL S SUBUNIT 1 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo07g01365 578 Gene3D Classic Zinc Finger 476 577 - -
Cmo07g01365 578 SMART AN1_Zf_4 387 428 IPR000058 GO:0008270
Cmo07g01365 578 SMART AN1_Zf_4 299 338 IPR000058 GO:0008270
Cmo07g01365 578 Pfam AN1-like Zinc finger 387 427 IPR000058 GO:0008270
Cmo07g01365 578 Pfam AN1-like Zinc finger 299 336 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00069 Cmo-Chr3:1065748 Cmo07g01365 Cmo-Chr7:7736340 0 dispersed
Cmo06g00041 Cmo-Chr6:260223 Cmo07g01365 Cmo-Chr7:7736340 2.92E-53 dispersed
Cmo07g01365 Cmo-Chr7:7736340 Cmo14g00483 Cmo-Chr14:2394031 3.90E-162 dispersed
Cmo14g00638 Cmo-Chr14:3213314 Cmo07g01365 Cmo-Chr7:7736340 1.10E-36 transposed
Cmo03g00068 Cmo-Chr3:1065372 Cmo07g01365 Cmo-Chr7:7736340 2.67E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10190 PF03719 Ribosomal_S5_C 3.10E-23 CL0329 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01365 K02981 - cmax:111466071 589.341